Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24310 and BPHYT_RS24315 are separated by 16 nucleotides BPHYT_RS24315 and BPHYT_RS24320 are separated by 292 nucleotides BPHYT_RS24320 and BPHYT_RS24325 overlap by 31 nucleotides
BPHYT_RS24310: BPHYT_RS24310 - nuclease, at 1,019,200 to 1,020,894
_RS24310
BPHYT_RS24315: BPHYT_RS24315 - phosphoribosyltransferase, at 1,020,911 to 1,021,858
_RS24315
BPHYT_RS24320: BPHYT_RS24320 - oxidoreductase, at 1,022,151 to 1,022,693
_RS24320
BPHYT_RS24325: BPHYT_RS24325 - histidine kinase, at 1,022,663 to 1,024,516
_RS24325
Position (kb) 1020
1021
1022 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1019.953 kb on + strand at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.954 kb on - strand, within BPHYT_RS24310 at 1019.954 kb on - strand, within BPHYT_RS24310 at 1019.954 kb on - strand, within BPHYT_RS24310 at 1020.025 kb on + strand, within BPHYT_RS24310 at 1020.271 kb on - strand, within BPHYT_RS24310 at 1020.353 kb on - strand, within BPHYT_RS24310 at 1020.446 kb on - strand, within BPHYT_RS24310 at 1020.446 kb on - strand, within BPHYT_RS24310 at 1020.628 kb on + strand, within BPHYT_RS24310 at 1020.629 kb on - strand, within BPHYT_RS24310 at 1020.770 kb on + strand at 1020.892 kb on + strand at 1021.347 kb on + strand, within BPHYT_RS24315 at 1021.357 kb on - strand, within BPHYT_RS24315 at 1021.683 kb on + strand, within BPHYT_RS24315 at 1021.866 kb on - strand at 1021.866 kb on - strand at 1021.969 kb on - strand at 1021.972 kb on - strand at 1021.972 kb on - strand at 1022.105 kb on + strand at 1022.129 kb on - strand at 1022.150 kb on + strand at 1022.332 kb on - strand, within BPHYT_RS24320 at 1022.495 kb on + strand, within BPHYT_RS24320 at 1022.495 kb on + strand, within BPHYT_RS24320 at 1022.495 kb on + strand, within BPHYT_RS24320 at 1022.496 kb on - strand, within BPHYT_RS24320 at 1022.496 kb on - strand, within BPHYT_RS24320 at 1022.496 kb on - strand, within BPHYT_RS24320 at 1022.500 kb on - strand, within BPHYT_RS24320 at 1022.500 kb on - strand, within BPHYT_RS24320 at 1022.547 kb on + strand, within BPHYT_RS24320 at 1022.548 kb on - strand, within BPHYT_RS24320 at 1022.601 kb on - strand, within BPHYT_RS24320 at 1022.605 kb on - strand, within BPHYT_RS24320 at 1022.663 kb on - strand at 1022.692 kb on - strand at 1022.780 kb on + strand at 1022.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 1,019,953 + -0.6 1,019,953 + BPHYT_RS24310 0.44 +0.2 1,019,953 + BPHYT_RS24310 0.44 +0.2 1,019,953 + BPHYT_RS24310 0.44 -0.2 1,019,953 + BPHYT_RS24310 0.44 +0.3 1,019,953 + BPHYT_RS24310 0.44 -0.0 1,019,953 + BPHYT_RS24310 0.44 -1.1 1,019,953 + BPHYT_RS24310 0.44 -0.9 1,019,954 - BPHYT_RS24310 0.44 -0.6 1,019,954 - BPHYT_RS24310 0.44 +0.1 1,019,954 - BPHYT_RS24310 0.44 +0.0 1,020,025 + BPHYT_RS24310 0.49 -0.5 1,020,271 - BPHYT_RS24310 0.63 +0.1 1,020,353 - BPHYT_RS24310 0.68 -0.3 1,020,446 - BPHYT_RS24310 0.74 -0.0 1,020,446 - BPHYT_RS24310 0.74 +0.3 1,020,628 + BPHYT_RS24310 0.84 +0.1 1,020,629 - BPHYT_RS24310 0.84 -0.3 1,020,770 + +0.7 1,020,892 + +0.0 1,021,347 + BPHYT_RS24315 0.46 -2.4 1,021,357 - BPHYT_RS24315 0.47 -0.9 1,021,683 + BPHYT_RS24315 0.81 -0.7 1,021,866 - -0.2 1,021,866 - -0.3 1,021,969 - +0.8 1,021,972 - +0.4 1,021,972 - -0.1 1,022,105 + +0.2 1,022,129 - +0.2 1,022,150 + +0.1 1,022,332 - BPHYT_RS24320 0.33 +0.3 1,022,495 + BPHYT_RS24320 0.63 +0.5 1,022,495 + BPHYT_RS24320 0.63 +0.4 1,022,495 + BPHYT_RS24320 0.63 +1.3 1,022,496 - BPHYT_RS24320 0.64 -0.2 1,022,496 - BPHYT_RS24320 0.64 -1.2 1,022,496 - BPHYT_RS24320 0.64 -0.6 1,022,500 - BPHYT_RS24320 0.64 +2.0 1,022,500 - BPHYT_RS24320 0.64 +0.3 1,022,547 + BPHYT_RS24320 0.73 -0.4 1,022,548 - BPHYT_RS24320 0.73 +0.3 1,022,601 - BPHYT_RS24320 0.83 +0.0 1,022,605 - BPHYT_RS24320 0.84 -0.4 1,022,663 - -0.2 1,022,692 - -0.7 1,022,780 + -0.1 1,022,828 + -1.7
Or see this region's nucleotide sequence