Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20225

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS20215 and BPHYT_RS20220 are separated by 128 nucleotidesBPHYT_RS20220 and BPHYT_RS20225 are separated by 87 nucleotidesBPHYT_RS20225 and BPHYT_RS20230 overlap by 4 nucleotidesBPHYT_RS20230 and BPHYT_RS20235 overlap by 4 nucleotides BPHYT_RS20215: BPHYT_RS20215 - RNA polymerase sigma 70, at 80,806 to 81,477 _RS20215 BPHYT_RS20220: BPHYT_RS20220 - antibiotic synthesis protein MbtH, at 81,606 to 81,845 _RS20220 BPHYT_RS20225: BPHYT_RS20225 - taurine catabolism dioxygenase tauD/tfdA, at 81,933 to 82,967 _RS20225 BPHYT_RS20230: BPHYT_RS20230 - ABC transporter, at 82,964 to 83,830 _RS20230 BPHYT_RS20235: BPHYT_RS20235 - iron ABC transporter, at 83,827 to 85,935 _RS20235 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1at 81.094 kb on + strand, within BPHYT_RS20215at 81.094 kb on + strand, within BPHYT_RS20215at 81.095 kb on - strand, within BPHYT_RS20215at 81.507 kb on + strandat 81.664 kb on - strand, within BPHYT_RS20220at 81.693 kb on + strand, within BPHYT_RS20220at 81.933 kb on - strandat 82.029 kb on + strandat 82.097 kb on - strand, within BPHYT_RS20225at 82.176 kb on + strand, within BPHYT_RS20225at 82.221 kb on + strand, within BPHYT_RS20225at 82.222 kb on - strand, within BPHYT_RS20225at 82.222 kb on - strand, within BPHYT_RS20225at 82.279 kb on - strand, within BPHYT_RS20225at 82.302 kb on - strand, within BPHYT_RS20225at 82.645 kb on + strand, within BPHYT_RS20225at 82.729 kb on - strand, within BPHYT_RS20225at 82.729 kb on - strand, within BPHYT_RS20225at 82.914 kb on + strandat 82.915 kb on - strandat 83.809 kb on - strandat 83.884 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
remove
81,094 + BPHYT_RS20215 0.43 +0.3
81,094 + BPHYT_RS20215 0.43 -0.7
81,095 - BPHYT_RS20215 0.43 -1.1
81,507 + -1.0
81,664 - BPHYT_RS20220 0.24 -0.8
81,693 + BPHYT_RS20220 0.36 -0.1
81,933 - -2.6
82,029 + -0.4
82,097 - BPHYT_RS20225 0.16 -0.6
82,176 + BPHYT_RS20225 0.23 -1.3
82,221 + BPHYT_RS20225 0.28 -0.7
82,222 - BPHYT_RS20225 0.28 -1.2
82,222 - BPHYT_RS20225 0.28 +0.5
82,279 - BPHYT_RS20225 0.33 -1.5
82,302 - BPHYT_RS20225 0.36 -0.1
82,645 + BPHYT_RS20225 0.69 -1.2
82,729 - BPHYT_RS20225 0.77 -0.7
82,729 - BPHYT_RS20225 0.77 +0.2
82,914 + -0.9
82,915 - +1.5
83,809 - -1.5
83,884 + -0.7

Or see this region's nucleotide sequence