Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17760

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
4,008,098	+		BPHYT_RS17750	0.74	-0.6
4,008,098	+		BPHYT_RS17750	0.74	+0.1
4,008,098	+		BPHYT_RS17750	0.74	-0.3
4,008,099	-		BPHYT_RS17750	0.74	-0.2
4,008,099	-		BPHYT_RS17750	0.74	+1.7
4,008,099	-		BPHYT_RS17750	0.74	+0.2
4,008,167	+		BPHYT_RS17750	0.81	+0.6
4,008,168	-		BPHYT_RS17750	0.81	-0.3
4,008,168	-		BPHYT_RS17750	0.81	+0.0
4,008,194	+		BPHYT_RS17750	0.84	-0.1
4,008,280	-				+0.5
4,008,365	-				-0.1
4,008,365	-				+0.8
4,008,602	-		BPHYT_RS17755	0.41	-0.6
4,008,602	-		BPHYT_RS17755	0.41	-0.8
4,008,661	+		BPHYT_RS17755	0.52	-1.8
4,008,697	+		BPHYT_RS17755	0.58	-0.1
4,008,697	+		BPHYT_RS17755	0.58	-1.2
4,008,698	-		BPHYT_RS17755	0.58	-1.0
4,008,698	-		BPHYT_RS17755	0.58	+0.1
4,008,698	-		BPHYT_RS17755	0.58	-1.9
4,008,785	+		BPHYT_RS17755	0.74	-1.3
4,009,025	+				+0.1
4,009,026	-				+0.5
4,009,026	-				-0.3
4,009,026	-				-0.3
4,009,082	+				-1.2
4,009,292	+		BPHYT_RS17760	0.35	-2.3
4,009,292	+		BPHYT_RS17760	0.35	-1.2
4,009,577	+		BPHYT_RS17760	0.72	-0.9
4,009,578	-		BPHYT_RS17760	0.72	-3.0
4,009,580	+		BPHYT_RS17760	0.72	-1.5
4,009,581	-		BPHYT_RS17760	0.73	-1.9
4,009,643	+		BPHYT_RS17760	0.81	-1.1
4,009,643	+		BPHYT_RS17760	0.81	-1.3
4,009,644	-		BPHYT_RS17760	0.81	-1.3
4,009,644	-		BPHYT_RS17760	0.81	-1.6
4,009,648	-		BPHYT_RS17760	0.81	-3.3
4,009,740	-				-1.5
4,009,740	-				-2.6
4,009,963	+		BPHYT_RS17765	0.21	-0.7
4,009,964	-		BPHYT_RS17765	0.21	-1.3
4,009,964	-		BPHYT_RS17765	0.21	-0.2
4,009,964	-		BPHYT_RS17765	0.21	-1.9
4,010,107	+		BPHYT_RS17765	0.39	-0.5
4,010,108	-		BPHYT_RS17765	0.39	-1.0
4,010,108	-		BPHYT_RS17765	0.39	-1.7
4,010,108	-		BPHYT_RS17765	0.39	-1.5
4,010,586	+				-1.1
4,010,587	-				-0.2
4,010,587	-				-1.2
4,010,628	-				-0.1
4,010,643	+				-1.1
4,010,643	+				-1.0
4,010,644	-				-0.1
4,010,645	+				+0.1
4,010,689	-				-0.5
4,010,692	+				-0.3
4,010,692	+				-0.0
4,010,692	+				+0.1
4,010,692	+				-0.0
4,010,693	-				+0.3
4,010,693	-				+0.6