Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09215

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
2,084,699	+				+0.1
2,084,770	+				+0.5
2,084,852	-		BPHYT_RS09210	0.21	-0.0
2,084,852	-		BPHYT_RS09210	0.21	+0.7
2,084,969	-		BPHYT_RS09210	0.33	+0.5
2,085,004	+		BPHYT_RS09210	0.37	-0.3
2,085,004	+		BPHYT_RS09210	0.37	-0.0
2,085,124	-		BPHYT_RS09210	0.49	+0.1
2,085,271	+		BPHYT_RS09210	0.63	+0.2
2,085,271	+		BPHYT_RS09210	0.63	-0.4
2,085,556	-				-0.6
2,085,815	+				+0.4
2,085,815	+				+0.2
2,085,815	+				+0.3
2,085,968	+		BPHYT_RS09215	0.10	-0.6
2,085,968	+		BPHYT_RS09215	0.10	+0.1
2,085,969	-		BPHYT_RS09215	0.10	-0.3
2,086,005	-		BPHYT_RS09215	0.11	-0.1
2,086,082	+		BPHYT_RS09215	0.14	-0.0
2,086,156	+		BPHYT_RS09215	0.17	+0.3
2,086,233	-		BPHYT_RS09215	0.19	+0.2
2,086,289	-		BPHYT_RS09215	0.21	-0.2
2,086,835	+		BPHYT_RS09215	0.41	-0.6
2,086,847	-		BPHYT_RS09215	0.41	+0.3
2,086,848	+		BPHYT_RS09215	0.41	+0.7
2,086,848	+		BPHYT_RS09215	0.41	-0.2
2,086,848	+		BPHYT_RS09215	0.41	-0.3
2,086,848	+		BPHYT_RS09215	0.41	-0.1
2,086,849	-		BPHYT_RS09215	0.41	+0.2
2,086,936	+		BPHYT_RS09215	0.44	+0.4
2,087,046	-		BPHYT_RS09215	0.48	-1.5
2,087,171	+		BPHYT_RS09215	0.53	+0.3
2,087,172	-		BPHYT_RS09215	0.53	+0.2
2,087,347	-		BPHYT_RS09215	0.59	-0.2
2,087,542	+		BPHYT_RS09215	0.66	+0.6
2,087,702	+		BPHYT_RS09215	0.72	+1.1
2,087,703	-		BPHYT_RS09215	0.72	+0.6
2,087,885	-		BPHYT_RS09215	0.78	-0.3
2,087,885	-		BPHYT_RS09215	0.78	-1.5
2,088,009	+		BPHYT_RS09215	0.82	+0.0
2,088,010	-		BPHYT_RS09215	0.82	+0.1
2,088,184	+		BPHYT_RS09215	0.89	+0.3
2,088,184	+		BPHYT_RS09215	0.89	-0.0
2,088,184	+		BPHYT_RS09215	0.89	-0.1
2,088,185	-		BPHYT_RS09215	0.89	+1.2
2,088,207	-		BPHYT_RS09215	0.89	-0.0
2,088,504	-				-0.4
2,088,541	-				-0.7
2,088,914	-				-0.2
2,088,914	-				-0.7
2,088,992	-		BPHYT_RS09225	0.11	+0.3
2,089,028	-		BPHYT_RS09225	0.15	+0.6
2,089,066	+		BPHYT_RS09225	0.19	-0.5
2,089,066	+		BPHYT_RS09225	0.19	-0.1
2,089,067	-		BPHYT_RS09225	0.19	-0.4