Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08245

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
1,882,085	+				+0.5
1,882,085	+				+1.5
1,882,085	+				-0.1
1,882,085	+				+0.4
1,882,086	-				-0.4
1,882,086	-				-0.1
1,882,086	-				-1.1
1,882,086	-				-0.5
1,882,086	-				+0.0
1,882,086	-				-0.2
1,882,096	+				-0.1
1,882,242	+				+1.5
1,882,336	-				-0.6
1,882,336	-				-1.7
1,882,396	-				-0.3
1,882,729	+		BPHYT_RS08240	0.36	-0.2
1,882,729	+		BPHYT_RS08240	0.36	-0.4
1,882,729	+		BPHYT_RS08240	0.36	-0.9
1,882,730	-		BPHYT_RS08240	0.36	+0.1
1,882,856	-		BPHYT_RS08240	0.60	+0.3
1,882,856	-		BPHYT_RS08240	0.60	-0.1
1,883,511	+		BPHYT_RS08245	0.52	-1.0
1,883,512	-		BPHYT_RS08245	0.52	-0.6
1,883,520	+		BPHYT_RS08245	0.53	-2.1
1,883,634	+		BPHYT_RS08245	0.66	-1.6
1,883,635	-		BPHYT_RS08245	0.66	-1.2
1,883,733	+		BPHYT_RS08245	0.78	-0.3
1,883,734	-		BPHYT_RS08245	0.78	-3.4
1,883,803	-				-0.9
1,884,108	-				-0.9
1,884,179	+				-0.6
1,884,441	+		BPHYT_RS08250	0.53	+0.1
1,884,442	-		BPHYT_RS08250	0.53	+0.2
1,884,459	+		BPHYT_RS08250	0.56	-0.3
1,884,549	+		BPHYT_RS08250	0.76	+0.5