Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07000 and BPHYT_RS07005 are separated by 219 nucleotides BPHYT_RS07005 and BPHYT_RS07010 are separated by 22 nucleotides BPHYT_RS07010 and BPHYT_RS07015 are separated by 60 nucleotides BPHYT_RS07015 and BPHYT_RS07020 are separated by 110 nucleotides
BPHYT_RS07000: BPHYT_RS07000 - acetyl-CoA synthetase, at 1,582,248 to 1,584,230
_RS07000
BPHYT_RS07005: BPHYT_RS07005 - membrane protein, at 1,584,450 to 1,584,740
_RS07005
BPHYT_RS07010: BPHYT_RS07010 - sodium:solute symporter, at 1,584,763 to 1,586,781
_RS07010
BPHYT_RS07015: BPHYT_RS07015 - tRNA-Ser, at 1,586,842 to 1,586,932
_RS07015
BPHYT_RS07020: BPHYT_RS07020 - acyltransferase, at 1,587,043 to 1,588,176
_RS07020
Position (kb) 1584
1585
1586
1587 Strain fitness (log2 ratio) -1
0
1 at 1584.229 kb on - strand at 1584.263 kb on + strand at 1584.371 kb on + strand at 1584.371 kb on + strand at 1584.472 kb on - strand at 1584.597 kb on + strand, within BPHYT_RS07005 at 1584.648 kb on + strand, within BPHYT_RS07005 at 1584.649 kb on - strand, within BPHYT_RS07005 at 1584.649 kb on - strand, within BPHYT_RS07005 at 1584.829 kb on + strand at 1584.830 kb on - strand at 1584.830 kb on - strand at 1584.830 kb on - strand at 1584.880 kb on + strand at 1584.881 kb on - strand at 1584.910 kb on + strand at 1584.911 kb on - strand at 1584.911 kb on - strand at 1585.058 kb on - strand, within BPHYT_RS07010 at 1585.058 kb on - strand, within BPHYT_RS07010 at 1585.058 kb on - strand, within BPHYT_RS07010 at 1585.486 kb on + strand, within BPHYT_RS07010 at 1586.000 kb on - strand, within BPHYT_RS07010 at 1586.043 kb on - strand, within BPHYT_RS07010 at 1586.330 kb on - strand, within BPHYT_RS07010 at 1586.332 kb on + strand, within BPHYT_RS07010 at 1586.333 kb on - strand, within BPHYT_RS07010 at 1586.419 kb on + strand, within BPHYT_RS07010 at 1586.420 kb on - strand, within BPHYT_RS07010 at 1586.437 kb on - strand, within BPHYT_RS07010 at 1586.584 kb on + strand at 1586.585 kb on - strand at 1586.585 kb on - strand at 1586.587 kb on + strand at 1586.588 kb on - strand at 1586.745 kb on + strand at 1586.764 kb on + strand at 1586.764 kb on + strand at 1586.765 kb on - strand at 1586.766 kb on + strand at 1586.766 kb on + strand at 1586.944 kb on + strand at 1587.082 kb on + strand at 1587.151 kb on + strand at 1587.204 kb on + strand, within BPHYT_RS07020 at 1587.205 kb on - strand, within BPHYT_RS07020 at 1587.435 kb on - strand, within BPHYT_RS07020 at 1587.544 kb on + strand, within BPHYT_RS07020 at 1587.545 kb on - strand, within BPHYT_RS07020 at 1587.545 kb on - strand, within BPHYT_RS07020 at 1587.545 kb on - strand, within BPHYT_RS07020 at 1587.729 kb on - strand, within BPHYT_RS07020
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X remove 1,584,229 - -0.4 1,584,263 + +0.5 1,584,371 + +0.0 1,584,371 + -0.0 1,584,472 - -0.3 1,584,597 + BPHYT_RS07005 0.51 +0.2 1,584,648 + BPHYT_RS07005 0.68 -0.0 1,584,649 - BPHYT_RS07005 0.68 +0.0 1,584,649 - BPHYT_RS07005 0.68 +0.1 1,584,829 + -0.3 1,584,830 - -0.5 1,584,830 - +1.0 1,584,830 - +0.1 1,584,880 + +0.3 1,584,881 - -0.4 1,584,910 + -0.2 1,584,911 - +0.6 1,584,911 - -1.0 1,585,058 - BPHYT_RS07010 0.15 +0.7 1,585,058 - BPHYT_RS07010 0.15 +1.0 1,585,058 - BPHYT_RS07010 0.15 -0.4 1,585,486 + BPHYT_RS07010 0.36 -0.4 1,586,000 - BPHYT_RS07010 0.61 +0.2 1,586,043 - BPHYT_RS07010 0.63 -1.4 1,586,330 - BPHYT_RS07010 0.78 +0.9 1,586,332 + BPHYT_RS07010 0.78 -0.0 1,586,333 - BPHYT_RS07010 0.78 -0.3 1,586,419 + BPHYT_RS07010 0.82 -0.3 1,586,420 - BPHYT_RS07010 0.82 -0.1 1,586,437 - BPHYT_RS07010 0.83 -0.1 1,586,584 + -0.2 1,586,585 - +0.5 1,586,585 - +0.9 1,586,587 + +0.2 1,586,588 - +0.5 1,586,745 + +0.8 1,586,764 + +0.5 1,586,764 + +0.3 1,586,765 - -0.4 1,586,766 + -0.3 1,586,766 + -0.2 1,586,944 + +0.6 1,587,082 + +0.7 1,587,151 + -0.2 1,587,204 + BPHYT_RS07020 0.14 -0.3 1,587,205 - BPHYT_RS07020 0.14 -0.1 1,587,435 - BPHYT_RS07020 0.35 -0.5 1,587,544 + BPHYT_RS07020 0.44 -1.3 1,587,545 - BPHYT_RS07020 0.44 +0.2 1,587,545 - BPHYT_RS07020 0.44 +0.5 1,587,545 - BPHYT_RS07020 0.44 +0.2 1,587,729 - BPHYT_RS07020 0.60 +0.5
Or see this region's nucleotide sequence