Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05355

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
1,231,434	-		BPHYT_RS05350	0.50	-0.1
1,231,513	-		BPHYT_RS05350	0.59	+0.2
1,231,513	-		BPHYT_RS05350	0.59	+0.1
1,231,872	-				-0.8
1,232,067	+				-0.0
1,232,067	+				+0.2
1,232,072	-				-0.2
1,232,072	-				+0.0
1,232,112	+				-0.4
1,232,113	-				+0.0
1,232,122	+				+1.2
1,232,180	+		BPHYT_RS05355	0.11	-0.9
1,232,181	-		BPHYT_RS05355	0.12	-1.5
1,232,458	+		BPHYT_RS05355	0.51	+0.1
1,232,749	+				+0.5
1,232,961	+				+0.1
1,233,102	+				+2.1
1,233,102	+				-0.6
1,233,127	-				-0.3
1,233,168	+				+0.4
1,233,168	+				-0.3
1,233,170	+				-0.1
1,233,170	+				-0.9
1,233,170	+				+0.8
1,233,171	-				-0.0
1,233,171	-				+0.2
1,233,171	-				-0.3
1,233,171	-				-0.3
1,233,343	-		BPHYT_RS05360	0.19	-0.1
1,233,573	+		BPHYT_RS05360	0.36	+0.8
1,233,574	-		BPHYT_RS05360	0.36	+0.0
1,233,630	-		BPHYT_RS05360	0.40	+0.2
1,233,633	+		BPHYT_RS05360	0.41	-0.6
1,233,787	-		BPHYT_RS05360	0.52	+0.5