Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31730

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31720 and BPHYT_RS31725 are separated by 190 nucleotidesBPHYT_RS31725 and BPHYT_RS31730 are separated by 102 nucleotidesBPHYT_RS31730 and BPHYT_RS31735 are separated by 13 nucleotides BPHYT_RS31720: BPHYT_RS31720 - LysR family transcriptional regulator, at 2,673,842 to 2,674,771 _RS31720 BPHYT_RS31725: BPHYT_RS31725 - hypothetical protein, at 2,674,962 to 2,675,183 _RS31725 BPHYT_RS31730: BPHYT_RS31730 - aminotransferase class III, at 2,675,286 to 2,676,620 _RS31730 BPHYT_RS31735: BPHYT_RS31735 - hydroxypyruvate isomerase, at 2,676,634 to 2,677,422 _RS31735 Position (kb) 2675 2676 2677Strain fitness (log2 ratio) -2 -1 0 1at 2675.144 kb on - strand, within BPHYT_RS31725at 2675.462 kb on - strand, within BPHYT_RS31730at 2675.967 kb on + strand, within BPHYT_RS31730at 2675.968 kb on - strand, within BPHYT_RS31730at 2675.968 kb on - strand, within BPHYT_RS31730at 2677.050 kb on - strand, within BPHYT_RS31735

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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2,675,144 - BPHYT_RS31725 0.82 -0.0
2,675,462 - BPHYT_RS31730 0.13 -2.6
2,675,967 + BPHYT_RS31730 0.51 -0.3
2,675,968 - BPHYT_RS31730 0.51 -1.7
2,675,968 - BPHYT_RS31730 0.51 -1.5
2,677,050 - BPHYT_RS31735 0.53 -0.8

Or see this region's nucleotide sequence