Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30995

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30985 and BPHYT_RS30990 overlap by 1 nucleotidesBPHYT_RS30990 and BPHYT_RS30995 overlap by 4 nucleotidesBPHYT_RS30995 and BPHYT_RS31000 are separated by 3 nucleotides BPHYT_RS30985: BPHYT_RS30985 - dTDP-4-dehydrorhamnose reductase, at 2,507,552 to 2,508,454 _RS30985 BPHYT_RS30990: BPHYT_RS30990 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,508,454 to 2,509,002 _RS30990 BPHYT_RS30995: BPHYT_RS30995 - glucose-1-phosphate thymidylyltransferase, at 2,508,999 to 2,509,886 _RS30995 BPHYT_RS31000: BPHYT_RS31000 - dTDP-glucose 4,6-dehydratase, at 2,509,890 to 2,510,951 _RS31000 Position (kb) 2508 2509 2510Strain fitness (log2 ratio) -2 -1 0 1at 2508.084 kb on + strand, within BPHYT_RS30985at 2508.867 kb on + strand, within BPHYT_RS30990at 2509.789 kb on + strand, within BPHYT_RS30995at 2510.276 kb on - strand, within BPHYT_RS31000

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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2,508,084 + BPHYT_RS30985 0.59 -1.9
2,508,867 + BPHYT_RS30990 0.75 -0.4
2,509,789 + BPHYT_RS30995 0.89 +0.7
2,510,276 - BPHYT_RS31000 0.36 +0.9

Or see this region's nucleotide sequence