Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26465

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26455 and BPHYT_RS26460 are separated by 165 nucleotidesBPHYT_RS26460 and BPHYT_RS26465 are separated by 33 nucleotidesBPHYT_RS26465 and BPHYT_RS26470 are separated by 379 nucleotides BPHYT_RS26455: BPHYT_RS26455 - hypothetical protein, at 1,507,068 to 1,507,505 _RS26455 BPHYT_RS26460: BPHYT_RS26460 - hypothetical protein, at 1,507,671 to 1,508,015 _RS26460 BPHYT_RS26465: BPHYT_RS26465 - metallophosphoesterase, at 1,508,049 to 1,508,993 _RS26465 BPHYT_RS26470: BPHYT_RS26470 - MFS transporter, at 1,509,373 to 1,510,119 _RS26470 Position (kb) 1508 1509Strain fitness (log2 ratio) -1 0 1at 1507.644 kb on + strandat 1508.627 kb on + strand, within BPHYT_RS26465at 1509.269 kb on + strandat 1509.351 kb on - strandat 1509.686 kb on - strand, within BPHYT_RS26470

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,507,644 + -0.5
1,508,627 + BPHYT_RS26465 0.61 +0.9
1,509,269 + +0.5
1,509,351 - +0.6
1,509,686 - BPHYT_RS26470 0.42 -1.2

Or see this region's nucleotide sequence