Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24310 and BPHYT_RS24315 are separated by 16 nucleotides BPHYT_RS24315 and BPHYT_RS24320 are separated by 292 nucleotides BPHYT_RS24320 and BPHYT_RS24325 overlap by 31 nucleotides
BPHYT_RS24310: BPHYT_RS24310 - nuclease, at 1,019,200 to 1,020,894
_RS24310
BPHYT_RS24315: BPHYT_RS24315 - phosphoribosyltransferase, at 1,020,911 to 1,021,858
_RS24315
BPHYT_RS24320: BPHYT_RS24320 - oxidoreductase, at 1,022,151 to 1,022,693
_RS24320
BPHYT_RS24325: BPHYT_RS24325 - histidine kinase, at 1,022,663 to 1,024,516
_RS24325
Position (kb) 1020
1021
1022 Strain fitness (log2 ratio) -1
0
1
2 at 1019.953 kb on + strand at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.953 kb on + strand, within BPHYT_RS24310 at 1019.954 kb on - strand, within BPHYT_RS24310 at 1019.954 kb on - strand, within BPHYT_RS24310 at 1019.954 kb on - strand, within BPHYT_RS24310 at 1020.025 kb on + strand, within BPHYT_RS24310 at 1020.271 kb on - strand, within BPHYT_RS24310 at 1020.353 kb on - strand, within BPHYT_RS24310 at 1020.446 kb on - strand, within BPHYT_RS24310 at 1020.446 kb on - strand, within BPHYT_RS24310 at 1020.628 kb on + strand, within BPHYT_RS24310 at 1020.629 kb on - strand, within BPHYT_RS24310 at 1020.770 kb on + strand at 1020.892 kb on + strand at 1021.347 kb on + strand, within BPHYT_RS24315 at 1021.357 kb on - strand, within BPHYT_RS24315 at 1021.683 kb on + strand, within BPHYT_RS24315 at 1021.866 kb on - strand at 1021.866 kb on - strand at 1021.969 kb on - strand at 1021.972 kb on - strand at 1021.972 kb on - strand at 1022.105 kb on + strand at 1022.129 kb on - strand at 1022.150 kb on + strand at 1022.332 kb on - strand, within BPHYT_RS24320 at 1022.495 kb on + strand, within BPHYT_RS24320 at 1022.495 kb on + strand, within BPHYT_RS24320 at 1022.495 kb on + strand, within BPHYT_RS24320 at 1022.496 kb on - strand, within BPHYT_RS24320 at 1022.496 kb on - strand, within BPHYT_RS24320 at 1022.496 kb on - strand, within BPHYT_RS24320 at 1022.500 kb on - strand, within BPHYT_RS24320 at 1022.500 kb on - strand, within BPHYT_RS24320 at 1022.547 kb on + strand, within BPHYT_RS24320 at 1022.548 kb on - strand, within BPHYT_RS24320 at 1022.601 kb on - strand, within BPHYT_RS24320 at 1022.605 kb on - strand, within BPHYT_RS24320 at 1022.663 kb on - strand at 1022.692 kb on - strand at 1022.780 kb on + strand at 1022.828 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 1,019,953 + +0.5 1,019,953 + BPHYT_RS24310 0.44 -0.3 1,019,953 + BPHYT_RS24310 0.44 -0.1 1,019,953 + BPHYT_RS24310 0.44 +0.0 1,019,953 + BPHYT_RS24310 0.44 -0.4 1,019,953 + BPHYT_RS24310 0.44 +0.2 1,019,953 + BPHYT_RS24310 0.44 -1.1 1,019,953 + BPHYT_RS24310 0.44 -0.9 1,019,954 - BPHYT_RS24310 0.44 -0.0 1,019,954 - BPHYT_RS24310 0.44 -0.6 1,019,954 - BPHYT_RS24310 0.44 +0.3 1,020,025 + BPHYT_RS24310 0.49 +0.5 1,020,271 - BPHYT_RS24310 0.63 +0.8 1,020,353 - BPHYT_RS24310 0.68 -0.2 1,020,446 - BPHYT_RS24310 0.74 +0.2 1,020,446 - BPHYT_RS24310 0.74 +0.0 1,020,628 + BPHYT_RS24310 0.84 -0.6 1,020,629 - BPHYT_RS24310 0.84 -0.1 1,020,770 + -0.5 1,020,892 + -0.7 1,021,347 + BPHYT_RS24315 0.46 +1.5 1,021,357 - BPHYT_RS24315 0.47 +1.5 1,021,683 + BPHYT_RS24315 0.81 -1.5 1,021,866 - -0.2 1,021,866 - -0.7 1,021,969 - +0.7 1,021,972 - -0.1 1,021,972 - +0.8 1,022,105 + +0.6 1,022,129 - +0.3 1,022,150 + -0.2 1,022,332 - BPHYT_RS24320 0.33 +0.1 1,022,495 + BPHYT_RS24320 0.63 -0.5 1,022,495 + BPHYT_RS24320 0.63 -0.6 1,022,495 + BPHYT_RS24320 0.63 +1.0 1,022,496 - BPHYT_RS24320 0.64 +0.1 1,022,496 - BPHYT_RS24320 0.64 +1.8 1,022,496 - BPHYT_RS24320 0.64 -0.2 1,022,500 - BPHYT_RS24320 0.64 -1.6 1,022,500 - BPHYT_RS24320 0.64 +0.5 1,022,547 + BPHYT_RS24320 0.73 -0.9 1,022,548 - BPHYT_RS24320 0.73 -0.7 1,022,601 - BPHYT_RS24320 0.83 +0.3 1,022,605 - BPHYT_RS24320 0.84 +0.1 1,022,663 - +0.4 1,022,692 - -0.9 1,022,780 + +2.0 1,022,828 + +0.0
Or see this region's nucleotide sequence