Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09085

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09080 and BPHYT_RS09085 are separated by 124 nucleotidesBPHYT_RS09085 and BPHYT_RS09090 are separated by 75 nucleotides BPHYT_RS09080: BPHYT_RS09080 - ABC transporter substrate-binding protein, at 2,054,851 to 2,055,888 _RS09080 BPHYT_RS09085: BPHYT_RS09085 - mannosyltransferase, at 2,056,013 to 2,056,825 _RS09085 BPHYT_RS09090: BPHYT_RS09090 - ABC transporter permease, at 2,056,901 to 2,057,725 _RS09090 Position (kb) 2056 2057Strain fitness (log2 ratio) -2 -1 0 1at 2055.023 kb on - strand, within BPHYT_RS09080at 2055.023 kb on - strand, within BPHYT_RS09080at 2055.135 kb on + strand, within BPHYT_RS09080at 2055.238 kb on + strand, within BPHYT_RS09080at 2055.238 kb on + strand, within BPHYT_RS09080at 2055.239 kb on - strand, within BPHYT_RS09080at 2055.493 kb on - strand, within BPHYT_RS09080at 2055.529 kb on - strand, within BPHYT_RS09080at 2055.547 kb on + strand, within BPHYT_RS09080at 2055.548 kb on - strand, within BPHYT_RS09080at 2055.548 kb on - strand, within BPHYT_RS09080at 2055.676 kb on + strand, within BPHYT_RS09080at 2055.700 kb on + strand, within BPHYT_RS09080at 2055.700 kb on + strand, within BPHYT_RS09080at 2056.163 kb on - strand, within BPHYT_RS09085at 2056.224 kb on + strand, within BPHYT_RS09085at 2056.268 kb on - strand, within BPHYT_RS09085at 2056.268 kb on - strand, within BPHYT_RS09085at 2056.268 kb on - strand, within BPHYT_RS09085at 2056.800 kb on - strandat 2056.829 kb on + strandat 2056.865 kb on - strandat 2057.112 kb on - strand, within BPHYT_RS09090at 2057.235 kb on - strand, within BPHYT_RS09090at 2057.366 kb on + strand, within BPHYT_RS09090at 2057.494 kb on + strand, within BPHYT_RS09090at 2057.495 kb on - strand, within BPHYT_RS09090at 2057.537 kb on + strand, within BPHYT_RS09090at 2057.538 kb on - strand, within BPHYT_RS09090at 2057.602 kb on + strand, within BPHYT_RS09090at 2057.603 kb on - strand, within BPHYT_RS09090at 2057.603 kb on - strand, within BPHYT_RS09090

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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2,055,023 - BPHYT_RS09080 0.17 -0.6
2,055,023 - BPHYT_RS09080 0.17 +0.8
2,055,135 + BPHYT_RS09080 0.27 -0.0
2,055,238 + BPHYT_RS09080 0.37 +0.3
2,055,238 + BPHYT_RS09080 0.37 -0.6
2,055,239 - BPHYT_RS09080 0.37 -0.5
2,055,493 - BPHYT_RS09080 0.62 -0.1
2,055,529 - BPHYT_RS09080 0.65 +0.2
2,055,547 + BPHYT_RS09080 0.67 -0.2
2,055,548 - BPHYT_RS09080 0.67 +0.6
2,055,548 - BPHYT_RS09080 0.67 +0.0
2,055,676 + BPHYT_RS09080 0.79 +0.3
2,055,700 + BPHYT_RS09080 0.82 +0.5
2,055,700 + BPHYT_RS09080 0.82 -0.6
2,056,163 - BPHYT_RS09085 0.18 +0.7
2,056,224 + BPHYT_RS09085 0.26 +0.6
2,056,268 - BPHYT_RS09085 0.31 +0.3
2,056,268 - BPHYT_RS09085 0.31 +1.2
2,056,268 - BPHYT_RS09085 0.31 +0.3
2,056,800 - -0.7
2,056,829 + -0.9
2,056,865 - +1.3
2,057,112 - BPHYT_RS09090 0.26 +0.4
2,057,235 - BPHYT_RS09090 0.40 -0.2
2,057,366 + BPHYT_RS09090 0.56 -0.4
2,057,494 + BPHYT_RS09090 0.72 +0.2
2,057,495 - BPHYT_RS09090 0.72 -2.2
2,057,537 + BPHYT_RS09090 0.77 -0.2
2,057,538 - BPHYT_RS09090 0.77 -0.1
2,057,602 + BPHYT_RS09090 0.85 +0.4
2,057,603 - BPHYT_RS09090 0.85 +0.2
2,057,603 - BPHYT_RS09090 0.85 -0.7

Or see this region's nucleotide sequence