Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06575 and BPHYT_RS06580 are separated by 98 nucleotides BPHYT_RS06580 and BPHYT_RS06585 are separated by 227 nucleotides BPHYT_RS06585 and BPHYT_RS06590 are separated by 184 nucleotides
BPHYT_RS06575: BPHYT_RS06575 - membrane protein, at 1,492,636 to 1,494,216
_RS06575
BPHYT_RS06580: BPHYT_RS06580 - carbonic anhydrase, at 1,494,315 to 1,494,950
_RS06580
BPHYT_RS06585: BPHYT_RS06585 - hypothetical protein, at 1,495,178 to 1,495,729
_RS06585
BPHYT_RS06590: BPHYT_RS06590 - ABC transporter permease, at 1,495,914 to 1,497,320
_RS06590
Position (kb)
1494
1495 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1493.683 kb on + strand, within BPHYT_RS06575 at 1493.882 kb on + strand, within BPHYT_RS06575 at 1493.882 kb on + strand, within BPHYT_RS06575 at 1493.883 kb on - strand, within BPHYT_RS06575 at 1493.883 kb on - strand, within BPHYT_RS06575 at 1494.656 kb on - strand, within BPHYT_RS06580 at 1494.840 kb on + strand, within BPHYT_RS06580 at 1494.841 kb on - strand, within BPHYT_RS06580 at 1494.965 kb on + strand at 1494.966 kb on - strand at 1495.002 kb on + strand at 1495.003 kb on - strand at 1495.047 kb on - strand at 1495.147 kb on + strand at 1495.151 kb on + strand at 1495.151 kb on + strand at 1495.151 kb on + strand at 1495.152 kb on - strand at 1495.152 kb on - strand at 1495.154 kb on - strand at 1495.154 kb on - strand at 1495.269 kb on + strand, within BPHYT_RS06585 at 1495.269 kb on + strand, within BPHYT_RS06585 at 1495.270 kb on - strand, within BPHYT_RS06585 at 1495.270 kb on - strand, within BPHYT_RS06585 at 1495.270 kb on - strand, within BPHYT_RS06585 at 1495.278 kb on + strand, within BPHYT_RS06585 at 1495.279 kb on - strand, within BPHYT_RS06585 at 1495.279 kb on - strand, within BPHYT_RS06585 at 1495.300 kb on - strand, within BPHYT_RS06585 at 1495.306 kb on - strand, within BPHYT_RS06585 at 1495.306 kb on - strand, within BPHYT_RS06585 at 1495.338 kb on + strand, within BPHYT_RS06585 at 1495.338 kb on + strand, within BPHYT_RS06585 at 1495.339 kb on - strand, within BPHYT_RS06585 at 1495.339 kb on - strand, within BPHYT_RS06585 at 1495.410 kb on + strand, within BPHYT_RS06585 at 1495.411 kb on - strand, within BPHYT_RS06585 at 1495.542 kb on + strand, within BPHYT_RS06585 at 1495.603 kb on - strand, within BPHYT_RS06585 at 1495.603 kb on - strand, within BPHYT_RS06585 at 1495.731 kb on + strand at 1495.731 kb on + strand at 1495.731 kb on + strand at 1495.732 kb on - strand at 1495.732 kb on - strand at 1495.732 kb on - strand at 1495.763 kb on + strand at 1495.779 kb on + strand at 1495.862 kb on + strand at 1495.862 kb on + strand at 1495.863 kb on - strand at 1495.881 kb on + strand at 1495.881 kb on + strand at 1495.881 kb on + strand at 1495.881 kb on + strand at 1495.882 kb on - strand at 1495.882 kb on - strand at 1495.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 1,493,683 + BPHYT_RS06575 0.66 +0.5 1,493,882 + BPHYT_RS06575 0.79 -0.2 1,493,882 + BPHYT_RS06575 0.79 +0.2 1,493,883 - BPHYT_RS06575 0.79 +1.0 1,493,883 - BPHYT_RS06575 0.79 +0.4 1,494,656 - BPHYT_RS06580 0.54 -0.1 1,494,840 + BPHYT_RS06580 0.83 +0.7 1,494,841 - BPHYT_RS06580 0.83 +2.0 1,494,965 + +0.0 1,494,966 - +0.2 1,495,002 + -0.1 1,495,003 - +0.2 1,495,047 - +0.4 1,495,147 + +0.1 1,495,151 + -0.0 1,495,151 + +0.4 1,495,151 + -0.0 1,495,152 - +0.8 1,495,152 - +0.3 1,495,154 - +2.8 1,495,154 - +0.2 1,495,269 + BPHYT_RS06585 0.16 +0.5 1,495,269 + BPHYT_RS06585 0.16 -0.3 1,495,270 - BPHYT_RS06585 0.17 +0.4 1,495,270 - BPHYT_RS06585 0.17 +0.3 1,495,270 - BPHYT_RS06585 0.17 -0.2 1,495,278 + BPHYT_RS06585 0.18 +0.3 1,495,279 - BPHYT_RS06585 0.18 -0.5 1,495,279 - BPHYT_RS06585 0.18 +0.4 1,495,300 - BPHYT_RS06585 0.22 +0.2 1,495,306 - BPHYT_RS06585 0.23 +0.5 1,495,306 - BPHYT_RS06585 0.23 -0.2 1,495,338 + BPHYT_RS06585 0.29 +0.4 1,495,338 + BPHYT_RS06585 0.29 +1.3 1,495,339 - BPHYT_RS06585 0.29 -0.3 1,495,339 - BPHYT_RS06585 0.29 -0.1 1,495,410 + BPHYT_RS06585 0.42 +0.6 1,495,411 - BPHYT_RS06585 0.42 -0.1 1,495,542 + BPHYT_RS06585 0.66 +0.2 1,495,603 - BPHYT_RS06585 0.77 +0.9 1,495,603 - BPHYT_RS06585 0.77 +0.1 1,495,731 + -0.2 1,495,731 + +0.1 1,495,731 + +1.4 1,495,732 - +0.2 1,495,732 - +1.3 1,495,732 - +1.2 1,495,763 + +0.8 1,495,779 + +0.6 1,495,862 + -0.4 1,495,862 + +0.8 1,495,863 - +0.3 1,495,881 + -0.5 1,495,881 + +1.4 1,495,881 + +0.3 1,495,881 + +1.0 1,495,882 - -0.2 1,495,882 - +0.9 1,495,882 - -0.6
Or see this region's nucleotide sequence