Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06580

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06575 and BPHYT_RS06580 are separated by 98 nucleotidesBPHYT_RS06580 and BPHYT_RS06585 are separated by 227 nucleotidesBPHYT_RS06585 and BPHYT_RS06590 are separated by 184 nucleotides BPHYT_RS06575: BPHYT_RS06575 - membrane protein, at 1,492,636 to 1,494,216 _RS06575 BPHYT_RS06580: BPHYT_RS06580 - carbonic anhydrase, at 1,494,315 to 1,494,950 _RS06580 BPHYT_RS06585: BPHYT_RS06585 - hypothetical protein, at 1,495,178 to 1,495,729 _RS06585 BPHYT_RS06590: BPHYT_RS06590 - ABC transporter permease, at 1,495,914 to 1,497,320 _RS06590 Position (kb) 1494 1495Strain fitness (log2 ratio) -1 0 1 2 3at 1493.683 kb on + strand, within BPHYT_RS06575at 1493.882 kb on + strand, within BPHYT_RS06575at 1493.882 kb on + strand, within BPHYT_RS06575at 1493.883 kb on - strand, within BPHYT_RS06575at 1493.883 kb on - strand, within BPHYT_RS06575at 1494.656 kb on - strand, within BPHYT_RS06580at 1494.840 kb on + strand, within BPHYT_RS06580at 1494.841 kb on - strand, within BPHYT_RS06580at 1494.965 kb on + strandat 1494.966 kb on - strandat 1495.002 kb on + strandat 1495.003 kb on - strandat 1495.047 kb on - strandat 1495.147 kb on + strandat 1495.151 kb on + strandat 1495.151 kb on + strandat 1495.151 kb on + strandat 1495.152 kb on - strandat 1495.152 kb on - strandat 1495.154 kb on - strandat 1495.154 kb on - strandat 1495.269 kb on + strand, within BPHYT_RS06585at 1495.269 kb on + strand, within BPHYT_RS06585at 1495.270 kb on - strand, within BPHYT_RS06585at 1495.270 kb on - strand, within BPHYT_RS06585at 1495.270 kb on - strand, within BPHYT_RS06585at 1495.278 kb on + strand, within BPHYT_RS06585at 1495.279 kb on - strand, within BPHYT_RS06585at 1495.279 kb on - strand, within BPHYT_RS06585at 1495.300 kb on - strand, within BPHYT_RS06585at 1495.306 kb on - strand, within BPHYT_RS06585at 1495.306 kb on - strand, within BPHYT_RS06585at 1495.338 kb on + strand, within BPHYT_RS06585at 1495.338 kb on + strand, within BPHYT_RS06585at 1495.339 kb on - strand, within BPHYT_RS06585at 1495.339 kb on - strand, within BPHYT_RS06585at 1495.410 kb on + strand, within BPHYT_RS06585at 1495.411 kb on - strand, within BPHYT_RS06585at 1495.542 kb on + strand, within BPHYT_RS06585at 1495.603 kb on - strand, within BPHYT_RS06585at 1495.603 kb on - strand, within BPHYT_RS06585at 1495.731 kb on + strandat 1495.731 kb on + strandat 1495.731 kb on + strandat 1495.732 kb on - strandat 1495.732 kb on - strandat 1495.732 kb on - strandat 1495.763 kb on + strandat 1495.779 kb on + strandat 1495.862 kb on + strandat 1495.862 kb on + strandat 1495.863 kb on - strandat 1495.881 kb on + strandat 1495.881 kb on + strandat 1495.881 kb on + strandat 1495.881 kb on + strandat 1495.882 kb on - strandat 1495.882 kb on - strandat 1495.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,493,683 + BPHYT_RS06575 0.66 +0.5
1,493,882 + BPHYT_RS06575 0.79 -0.2
1,493,882 + BPHYT_RS06575 0.79 +0.2
1,493,883 - BPHYT_RS06575 0.79 +1.0
1,493,883 - BPHYT_RS06575 0.79 +0.4
1,494,656 - BPHYT_RS06580 0.54 -0.1
1,494,840 + BPHYT_RS06580 0.83 +0.7
1,494,841 - BPHYT_RS06580 0.83 +2.0
1,494,965 + +0.0
1,494,966 - +0.2
1,495,002 + -0.1
1,495,003 - +0.2
1,495,047 - +0.4
1,495,147 + +0.1
1,495,151 + -0.0
1,495,151 + +0.4
1,495,151 + -0.0
1,495,152 - +0.8
1,495,152 - +0.3
1,495,154 - +2.8
1,495,154 - +0.2
1,495,269 + BPHYT_RS06585 0.16 +0.5
1,495,269 + BPHYT_RS06585 0.16 -0.3
1,495,270 - BPHYT_RS06585 0.17 +0.4
1,495,270 - BPHYT_RS06585 0.17 +0.3
1,495,270 - BPHYT_RS06585 0.17 -0.2
1,495,278 + BPHYT_RS06585 0.18 +0.3
1,495,279 - BPHYT_RS06585 0.18 -0.5
1,495,279 - BPHYT_RS06585 0.18 +0.4
1,495,300 - BPHYT_RS06585 0.22 +0.2
1,495,306 - BPHYT_RS06585 0.23 +0.5
1,495,306 - BPHYT_RS06585 0.23 -0.2
1,495,338 + BPHYT_RS06585 0.29 +0.4
1,495,338 + BPHYT_RS06585 0.29 +1.3
1,495,339 - BPHYT_RS06585 0.29 -0.3
1,495,339 - BPHYT_RS06585 0.29 -0.1
1,495,410 + BPHYT_RS06585 0.42 +0.6
1,495,411 - BPHYT_RS06585 0.42 -0.1
1,495,542 + BPHYT_RS06585 0.66 +0.2
1,495,603 - BPHYT_RS06585 0.77 +0.9
1,495,603 - BPHYT_RS06585 0.77 +0.1
1,495,731 + -0.2
1,495,731 + +0.1
1,495,731 + +1.4
1,495,732 - +0.2
1,495,732 - +1.3
1,495,732 - +1.2
1,495,763 + +0.8
1,495,779 + +0.6
1,495,862 + -0.4
1,495,862 + +0.8
1,495,863 - +0.3
1,495,881 + -0.5
1,495,881 + +1.4
1,495,881 + +0.3
1,495,881 + +1.0
1,495,882 - -0.2
1,495,882 - +0.9
1,495,882 - -0.6

Or see this region's nucleotide sequence