Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05085

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05080 and BPHYT_RS05085 are separated by 80 nucleotidesBPHYT_RS05085 and BPHYT_RS05090 are separated by 171 nucleotides BPHYT_RS05080: BPHYT_RS05080 - membrane protein, at 1,172,120 to 1,172,854 _RS05080 BPHYT_RS05085: BPHYT_RS05085 - LysR family transcriptional regulator, at 1,172,935 to 1,173,855 _RS05085 BPHYT_RS05090: BPHYT_RS05090 - agmatinase, at 1,174,027 to 1,175,016 _RS05090 Position (kb) 1172 1173 1174Strain fitness (log2 ratio) -1 0 1at 1171.966 kb on - strandat 1171.966 kb on - strandat 1172.117 kb on + strandat 1172.979 kb on + strandat 1172.980 kb on - strandat 1173.355 kb on - strand, within BPHYT_RS05085at 1173.541 kb on + strand, within BPHYT_RS05085at 1173.541 kb on + strand, within BPHYT_RS05085at 1173.542 kb on - strand, within BPHYT_RS05085at 1174.032 kb on + strandat 1174.264 kb on + strand, within BPHYT_RS05090at 1174.264 kb on + strand, within BPHYT_RS05090at 1174.760 kb on - strand, within BPHYT_RS05090

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,171,966 - +0.7
1,171,966 - +0.3
1,172,117 + -0.1
1,172,979 + +0.5
1,172,980 - +0.1
1,173,355 - BPHYT_RS05085 0.46 -1.3
1,173,541 + BPHYT_RS05085 0.66 -1.0
1,173,541 + BPHYT_RS05085 0.66 -0.2
1,173,542 - BPHYT_RS05085 0.66 -0.9
1,174,032 + +0.7
1,174,264 + BPHYT_RS05090 0.24 -0.2
1,174,264 + BPHYT_RS05090 0.24 -0.2
1,174,760 - BPHYT_RS05090 0.74 -0.4

Or see this region's nucleotide sequence