Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04585

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04585 and BPHYT_RS04590 are separated by 32 nucleotidesBPHYT_RS04590 and BPHYT_RS04595 overlap by 4 nucleotides BPHYT_RS04585: BPHYT_RS04585 - hypothetical protein, at 1,062,796 to 1,063,044 _RS04585 BPHYT_RS04590: BPHYT_RS04590 - virulence protein SciE type, at 1,063,077 to 1,063,949 _RS04590 BPHYT_RS04595: BPHYT_RS04595 - cytoplasmic protein, at 1,063,946 to 1,064,482 _RS04595 Position (kb) 1062 1063 1064Strain fitness (log2 ratio) -2 -1 0 1at 1062.391 kb on + strandat 1062.391 kb on + strandat 1062.391 kb on + strandat 1062.571 kb on - strandat 1062.608 kb on - strandat 1062.648 kb on + strandat 1062.688 kb on + strandat 1062.688 kb on + strandat 1062.688 kb on + strandat 1062.689 kb on - strandat 1062.825 kb on + strand, within BPHYT_RS04585at 1063.170 kb on - strand, within BPHYT_RS04590at 1063.216 kb on + strand, within BPHYT_RS04590at 1063.217 kb on - strand, within BPHYT_RS04590at 1063.217 kb on - strand, within BPHYT_RS04590at 1063.217 kb on - strand, within BPHYT_RS04590at 1063.220 kb on + strand, within BPHYT_RS04590at 1063.221 kb on - strand, within BPHYT_RS04590at 1063.221 kb on - strand, within BPHYT_RS04590at 1063.221 kb on - strand, within BPHYT_RS04590at 1063.376 kb on - strand, within BPHYT_RS04590at 1063.400 kb on - strand, within BPHYT_RS04590at 1063.571 kb on - strand, within BPHYT_RS04590at 1063.646 kb on - strand, within BPHYT_RS04590

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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1,062,391 + +0.5
1,062,391 + -0.4
1,062,391 + -0.4
1,062,571 - +0.1
1,062,608 - -2.3
1,062,648 + +0.5
1,062,688 + +0.4
1,062,688 + -2.4
1,062,688 + +0.2
1,062,689 - -0.5
1,062,825 + BPHYT_RS04585 0.12 -0.8
1,063,170 - BPHYT_RS04590 0.11 -0.4
1,063,216 + BPHYT_RS04590 0.16 +0.8
1,063,217 - BPHYT_RS04590 0.16 +0.1
1,063,217 - BPHYT_RS04590 0.16 +0.1
1,063,217 - BPHYT_RS04590 0.16 -0.4
1,063,220 + BPHYT_RS04590 0.16 -0.3
1,063,221 - BPHYT_RS04590 0.16 -1.6
1,063,221 - BPHYT_RS04590 0.16 -0.0
1,063,221 - BPHYT_RS04590 0.16 +0.4
1,063,376 - BPHYT_RS04590 0.34 -1.1
1,063,400 - BPHYT_RS04590 0.37 +0.1
1,063,571 - BPHYT_RS04590 0.57 -0.3
1,063,646 - BPHYT_RS04590 0.65 +1.6

Or see this region's nucleotide sequence