Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01975

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01970 and BPHYT_RS01975 are separated by 248 nucleotidesBPHYT_RS01975 and BPHYT_RS01980 are separated by 165 nucleotides BPHYT_RS01970: BPHYT_RS01970 - methyl-accepting chemotaxis protein, at 444,400 to 446,157 _RS01970 BPHYT_RS01975: BPHYT_RS01975 - hypothetical protein, at 446,406 to 446,639 _RS01975 BPHYT_RS01980: BPHYT_RS01980 - diguanylate cyclase, at 446,805 to 448,337 _RS01980 Position (kb) 446 447Strain fitness (log2 ratio) -2 -1 0 1 2at 445.589 kb on + strand, within BPHYT_RS01970at 445.601 kb on + strand, within BPHYT_RS01970at 445.602 kb on - strand, within BPHYT_RS01970at 445.629 kb on + strand, within BPHYT_RS01970at 445.769 kb on + strand, within BPHYT_RS01970at 445.769 kb on + strand, within BPHYT_RS01970at 445.770 kb on - strand, within BPHYT_RS01970at 445.909 kb on + strand, within BPHYT_RS01970at 445.909 kb on + strand, within BPHYT_RS01970at 445.948 kb on - strand, within BPHYT_RS01970at 446.055 kb on + strandat 446.095 kb on - strandat 446.239 kb on + strandat 446.264 kb on + strandat 446.264 kb on + strandat 446.264 kb on + strandat 446.383 kb on + strandat 446.383 kb on + strandat 446.383 kb on + strandat 446.384 kb on - strandat 446.384 kb on - strandat 446.437 kb on + strand, within BPHYT_RS01975at 446.776 kb on + strandat 446.843 kb on + strandat 446.844 kb on - strandat 446.985 kb on + strand, within BPHYT_RS01980at 446.986 kb on - strand, within BPHYT_RS01980at 446.986 kb on - strand, within BPHYT_RS01980at 447.231 kb on + strand, within BPHYT_RS01980at 447.231 kb on + strand, within BPHYT_RS01980at 447.231 kb on + strand, within BPHYT_RS01980at 447.231 kb on + strand, within BPHYT_RS01980at 447.232 kb on - strand, within BPHYT_RS01980at 447.232 kb on - strand, within BPHYT_RS01980at 447.232 kb on - strand, within BPHYT_RS01980at 447.232 kb on - strand, within BPHYT_RS01980at 447.355 kb on - strand, within BPHYT_RS01980at 447.355 kb on - strand, within BPHYT_RS01980at 447.467 kb on + strand, within BPHYT_RS01980at 447.467 kb on + strand, within BPHYT_RS01980at 447.493 kb on - strand, within BPHYT_RS01980at 447.564 kb on + strand, within BPHYT_RS01980at 447.565 kb on - strand, within BPHYT_RS01980at 447.565 kb on - strand, within BPHYT_RS01980at 447.578 kb on + strand, within BPHYT_RS01980at 447.579 kb on - strand, within BPHYT_RS01980at 447.589 kb on - strand, within BPHYT_RS01980at 447.589 kb on - strandat 447.630 kb on + strand, within BPHYT_RS01980at 447.631 kb on - strand, within BPHYT_RS01980at 447.631 kb on - strand, within BPHYT_RS01980

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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445,589 + BPHYT_RS01970 0.68 +0.6
445,601 + BPHYT_RS01970 0.68 -0.0
445,602 - BPHYT_RS01970 0.68 -0.4
445,629 + BPHYT_RS01970 0.70 +0.3
445,769 + BPHYT_RS01970 0.78 -0.1
445,769 + BPHYT_RS01970 0.78 -0.3
445,770 - BPHYT_RS01970 0.78 -0.3
445,909 + BPHYT_RS01970 0.86 -0.2
445,909 + BPHYT_RS01970 0.86 -0.4
445,948 - BPHYT_RS01970 0.88 +0.9
446,055 + +0.1
446,095 - +1.0
446,239 + +0.3
446,264 + +0.6
446,264 + +0.2
446,264 + +0.1
446,383 + +1.8
446,383 + +0.9
446,383 + +1.7
446,384 - +1.1
446,384 - -0.2
446,437 + BPHYT_RS01975 0.13 +0.5
446,776 + +1.3
446,843 + -0.0
446,844 - -1.6
446,985 + BPHYT_RS01980 0.12 -0.3
446,986 - BPHYT_RS01980 0.12 -0.6
446,986 - BPHYT_RS01980 0.12 -0.1
447,231 + BPHYT_RS01980 0.28 -0.1
447,231 + BPHYT_RS01980 0.28 -0.9
447,231 + BPHYT_RS01980 0.28 -0.3
447,231 + BPHYT_RS01980 0.28 -0.1
447,232 - BPHYT_RS01980 0.28 -0.0
447,232 - BPHYT_RS01980 0.28 -0.2
447,232 - BPHYT_RS01980 0.28 -0.2
447,232 - BPHYT_RS01980 0.28 +0.7
447,355 - BPHYT_RS01980 0.36 +0.1
447,355 - BPHYT_RS01980 0.36 -0.2
447,467 + BPHYT_RS01980 0.43 -1.9
447,467 + BPHYT_RS01980 0.43 -0.1
447,493 - BPHYT_RS01980 0.45 +0.7
447,564 + BPHYT_RS01980 0.50 +0.9
447,565 - BPHYT_RS01980 0.50 -0.1
447,565 - BPHYT_RS01980 0.50 -0.8
447,578 + BPHYT_RS01980 0.50 -0.1
447,579 - BPHYT_RS01980 0.50 +1.1
447,589 - BPHYT_RS01980 0.51 -1.4
447,589 - +0.8
447,630 + BPHYT_RS01980 0.54 -0.2
447,631 - BPHYT_RS01980 0.54 +0.9
447,631 - BPHYT_RS01980 0.54 -0.2

Or see this region's nucleotide sequence