Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00680 and BPHYT_RS00685 are separated by 330 nucleotides BPHYT_RS00685 and BPHYT_RS00690 are separated by 57 nucleotides BPHYT_RS00690 and BPHYT_RS00695 are separated by 164 nucleotides
BPHYT_RS00680: BPHYT_RS00680 - amidase, at 160,225 to 161,649
_RS00680
BPHYT_RS00685: BPHYT_RS00685 - transcriptional regulator, at 161,980 to 162,309
_RS00685
BPHYT_RS00690: BPHYT_RS00690 - transcriptional regulator, at 162,367 to 162,726
_RS00690
BPHYT_RS00695: BPHYT_RS00695 - branched-chain amino acid ABC transporter permease, at 162,891 to 163,766
_RS00695
Position (kb) 162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 161.507 kb on - strand at 161.599 kb on - strand at 161.599 kb on - strand at 161.601 kb on - strand at 161.601 kb on - strand at 161.601 kb on - strand at 161.602 kb on + strand at 161.603 kb on - strand at 161.649 kb on + strand at 161.649 kb on + strand at 161.649 kb on + strand at 161.650 kb on - strand at 161.650 kb on - strand at 161.673 kb on + strand at 161.684 kb on + strand at 161.781 kb on - strand at 161.787 kb on - strand at 161.837 kb on + strand at 162.086 kb on + strand, within BPHYT_RS00685 at 162.140 kb on - strand, within BPHYT_RS00685 at 162.292 kb on - strand at 162.298 kb on - strand at 162.634 kb on - strand, within BPHYT_RS00690 at 162.730 kb on - strand at 162.890 kb on + strand at 162.890 kb on + strand at 162.891 kb on - strand at 162.918 kb on + strand at 163.207 kb on + strand, within BPHYT_RS00695 at 163.207 kb on + strand, within BPHYT_RS00695 at 163.207 kb on + strand, within BPHYT_RS00695 at 163.208 kb on - strand, within BPHYT_RS00695 at 163.208 kb on - strand, within BPHYT_RS00695 at 163.208 kb on - strand, within BPHYT_RS00695 at 163.208 kb on - strand, within BPHYT_RS00695 at 163.264 kb on + strand, within BPHYT_RS00695 at 163.489 kb on + strand, within BPHYT_RS00695 at 163.489 kb on + strand, within BPHYT_RS00695 at 163.490 kb on - strand, within BPHYT_RS00695 at 163.634 kb on - strand, within BPHYT_RS00695
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 161,507 - -0.8 161,599 - +0.1 161,599 - -0.3 161,601 - +0.4 161,601 - +0.0 161,601 - +1.1 161,602 + -0.2 161,603 - -0.8 161,649 + -1.0 161,649 + +0.2 161,649 + -1.2 161,650 - -0.2 161,650 - +0.5 161,673 + +1.5 161,684 + -0.5 161,781 - -0.8 161,787 - +0.9 161,837 + +0.1 162,086 + BPHYT_RS00685 0.32 +1.0 162,140 - BPHYT_RS00685 0.48 -0.2 162,292 - -0.1 162,298 - -0.6 162,634 - BPHYT_RS00690 0.74 +0.8 162,730 - -0.0 162,890 + -2.3 162,890 + -0.1 162,891 - +0.5 162,918 + -1.4 163,207 + BPHYT_RS00695 0.36 -0.4 163,207 + BPHYT_RS00695 0.36 -0.7 163,207 + BPHYT_RS00695 0.36 +1.1 163,208 - BPHYT_RS00695 0.36 -0.2 163,208 - BPHYT_RS00695 0.36 -3.2 163,208 - BPHYT_RS00695 0.36 -0.3 163,208 - BPHYT_RS00695 0.36 -0.4 163,264 + BPHYT_RS00695 0.43 -0.2 163,489 + BPHYT_RS00695 0.68 +0.0 163,489 + BPHYT_RS00695 0.68 -0.4 163,490 - BPHYT_RS00695 0.68 +0.3 163,634 - BPHYT_RS00695 0.85 +0.0
Or see this region's nucleotide sequence