Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36600

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36590 and BPHYT_RS36595 are separated by 191 nucleotidesBPHYT_RS36595 and BPHYT_RS36600 are separated by 32 nucleotides BPHYT_RS36590: BPHYT_RS36590 - hypothetical protein, at 119,156 to 119,395 _RS36590 BPHYT_RS36595: BPHYT_RS36595 - hypothetical protein, at 119,587 to 120,114 _RS36595 BPHYT_RS36600: BPHYT_RS36600 - lytic transglycosylase, at 120,147 to 120,596 _RS36600 Position (kb) 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 119.157 kb on + strandat 119.157 kb on + strandat 119.289 kb on + strand, within BPHYT_RS36590at 119.289 kb on + strand, within BPHYT_RS36590at 119.292 kb on + strand, within BPHYT_RS36590at 119.536 kb on - strandat 119.862 kb on + strand, within BPHYT_RS36595at 119.890 kb on + strand, within BPHYT_RS36595at 119.995 kb on + strand, within BPHYT_RS36595at 120.030 kb on + strand, within BPHYT_RS36595at 120.046 kb on + strand, within BPHYT_RS36595at 120.128 kb on + strandat 120.312 kb on + strand, within BPHYT_RS36600at 120.456 kb on - strand, within BPHYT_RS36600at 120.509 kb on - strand, within BPHYT_RS36600at 120.561 kb on + strandat 120.561 kb on + strandat 120.859 kb on - strandat 120.859 kb on - strandat 120.859 kb on - strandat 120.893 kb on + strandat 121.006 kb on - strandat 121.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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119,157 + +1.1
119,157 + -0.1
119,289 + BPHYT_RS36590 0.55 -0.6
119,289 + BPHYT_RS36590 0.55 +0.2
119,292 + BPHYT_RS36590 0.57 +1.2
119,536 - -0.6
119,862 + BPHYT_RS36595 0.52 -0.1
119,890 + BPHYT_RS36595 0.57 +0.2
119,995 + BPHYT_RS36595 0.77 +0.1
120,030 + BPHYT_RS36595 0.84 +0.8
120,046 + BPHYT_RS36595 0.87 -0.3
120,128 + +0.5
120,312 + BPHYT_RS36600 0.37 +0.6
120,456 - BPHYT_RS36600 0.69 +0.3
120,509 - BPHYT_RS36600 0.80 +2.2
120,561 + -0.1
120,561 + +0.3
120,859 - -3.1
120,859 - -0.1
120,859 - -0.5
120,893 + -1.1
121,006 - +0.4
121,038 + +0.3

Or see this region's nucleotide sequence