Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36140

Experiment: R2A with Vogels_fungal_media 0.8X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS36135 and BPHYT_RS36140 are separated by 172 nucleotidesBPHYT_RS36140 and BPHYT_RS36145 are separated by 398 nucleotides BPHYT_RS36135: BPHYT_RS36135 - hypothetical protein, at 45,416 to 45,631 _RS36135 BPHYT_RS36140: BPHYT_RS36140 - hypothetical protein, at 45,804 to 46,325 _RS36140 BPHYT_RS36145: BPHYT_RS36145 - hypothetical protein, at 46,724 to 46,978 _RS36145 Position (kb) 45 46 47Strain fitness (log2 ratio) -1 0 1 2at 44.912 kb on - strandat 45.778 kb on - strandat 45.909 kb on - strand, within BPHYT_RS36140at 46.222 kb on + strand, within BPHYT_RS36140at 46.443 kb on + strandat 46.444 kb on - strandat 46.448 kb on - strandat 46.448 kb on - strandat 46.793 kb on + strand, within BPHYT_RS36145at 47.023 kb on + strandat 47.024 kb on - strandat 47.179 kb on + strandat 47.179 kb on + strandat 47.180 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
remove
44,912 - +0.1
45,778 - -0.6
45,909 - BPHYT_RS36140 0.20 +1.8
46,222 + BPHYT_RS36140 0.80 +0.4
46,443 + +0.1
46,444 - +0.6
46,448 - -0.6
46,448 - -0.1
46,793 + BPHYT_RS36145 0.27 -0.2
47,023 + -1.4
47,024 - -0.8
47,179 + -0.2
47,179 + -0.2
47,180 - +0.5

Or see this region's nucleotide sequence