Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35675

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35670 and BPHYT_RS35675 are separated by 384 nucleotidesBPHYT_RS35675 and BPHYT_RS35680 are separated by 64 nucleotides BPHYT_RS35670: BPHYT_RS35670 - bicyclomycin resistance protein, at 3,594,255 to 3,595,487 _RS35670 BPHYT_RS35675: BPHYT_RS35675 - short-chain dehydrogenase, at 3,595,872 to 3,596,645 _RS35675 BPHYT_RS35680: BPHYT_RS35680 - sugar ABC transporter ATP-binding protein, at 3,596,710 to 3,597,792 _RS35680 Position (kb) 3595 3596 3597Strain fitness (log2 ratio) -1 0 1 2at 3594.899 kb on - strand, within BPHYT_RS35670at 3595.042 kb on + strand, within BPHYT_RS35670at 3595.043 kb on - strand, within BPHYT_RS35670at 3595.045 kb on + strand, within BPHYT_RS35670at 3595.524 kb on - strandat 3595.722 kb on + strandat 3595.744 kb on - strandat 3596.208 kb on + strand, within BPHYT_RS35675at 3596.209 kb on - strand, within BPHYT_RS35675at 3596.209 kb on - strand, within BPHYT_RS35675at 3596.968 kb on + strand, within BPHYT_RS35680

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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3,594,899 - BPHYT_RS35670 0.52 -0.7
3,595,042 + BPHYT_RS35670 0.64 +0.9
3,595,043 - BPHYT_RS35670 0.64 -0.3
3,595,045 + BPHYT_RS35670 0.64 -0.4
3,595,524 - +0.5
3,595,722 + +0.9
3,595,744 - +0.0
3,596,208 + BPHYT_RS35675 0.43 -1.3
3,596,209 - BPHYT_RS35675 0.44 -0.6
3,596,209 - BPHYT_RS35675 0.44 -1.4
3,596,968 + BPHYT_RS35680 0.24 +2.0

Or see this region's nucleotide sequence