Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27810

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27805 and BPHYT_RS27810 are separated by 225 nucleotidesBPHYT_RS27810 and BPHYT_RS27815 are separated by 86 nucleotides BPHYT_RS27805: BPHYT_RS27805 - RNA-metabolising metallo-beta-lactamase, at 1,799,914 to 1,801,272 _RS27805 BPHYT_RS27810: BPHYT_RS27810 - nitroreductase, at 1,801,498 to 1,802,529 _RS27810 BPHYT_RS27815: BPHYT_RS27815 - transporter, at 1,802,616 to 1,804,364 _RS27815 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -1 0 1 2 3at 1800.667 kb on + strand, within BPHYT_RS27805at 1800.668 kb on - strand, within BPHYT_RS27805at 1801.160 kb on - strandat 1801.164 kb on + strandat 1801.729 kb on - strand, within BPHYT_RS27810at 1801.795 kb on - strand, within BPHYT_RS27810at 1801.795 kb on - strand, within BPHYT_RS27810at 1802.603 kb on + strandat 1802.669 kb on - strandat 1802.706 kb on + strandat 1802.821 kb on + strand, within BPHYT_RS27815at 1802.822 kb on - strand, within BPHYT_RS27815at 1803.184 kb on + strand, within BPHYT_RS27815at 1803.185 kb on - strand, within BPHYT_RS27815at 1803.262 kb on - strand, within BPHYT_RS27815at 1803.511 kb on - strand, within BPHYT_RS27815

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,800,667 + BPHYT_RS27805 0.55 +1.1
1,800,668 - BPHYT_RS27805 0.55 +0.5
1,801,160 - +0.1
1,801,164 + +0.0
1,801,729 - BPHYT_RS27810 0.22 -0.3
1,801,795 - BPHYT_RS27810 0.29 +1.4
1,801,795 - BPHYT_RS27810 0.29 +0.8
1,802,603 + +3.1
1,802,669 - +1.3
1,802,706 + -1.5
1,802,821 + BPHYT_RS27815 0.12 +0.5
1,802,822 - BPHYT_RS27815 0.12 +0.1
1,803,184 + BPHYT_RS27815 0.32 -0.1
1,803,185 - BPHYT_RS27815 0.33 +0.1
1,803,262 - BPHYT_RS27815 0.37 -0.0
1,803,511 - BPHYT_RS27815 0.51 -0.1

Or see this region's nucleotide sequence