Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27450

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27440 and BPHYT_RS27445 are separated by 410 nucleotidesBPHYT_RS27445 and BPHYT_RS27450 are separated by 120 nucleotidesBPHYT_RS27450 and BPHYT_RS27455 are separated by 292 nucleotides BPHYT_RS27440: BPHYT_RS27440 - type II citrate synthase, at 1,732,162 to 1,733,460 _RS27440 BPHYT_RS27445: BPHYT_RS27445 - hypothetical protein, at 1,733,871 to 1,734,272 _RS27445 BPHYT_RS27450: BPHYT_RS27450 - alpha/beta hydrolase, at 1,734,393 to 1,735,196 _RS27450 BPHYT_RS27455: BPHYT_RS27455 - rod shape-determining protein MreB, at 1,735,489 to 1,736,541 _RS27455 Position (kb) 1734 1735 1736Strain fitness (log2 ratio) -1 0 1at 1733.462 kb on + strandat 1734.006 kb on - strand, within BPHYT_RS27445at 1734.121 kb on - strand, within BPHYT_RS27445at 1734.271 kb on - strandat 1734.271 kb on - strandat 1734.543 kb on - strand, within BPHYT_RS27450at 1734.622 kb on + strand, within BPHYT_RS27450at 1734.623 kb on - strand, within BPHYT_RS27450at 1735.189 kb on + strandat 1735.267 kb on - strandat 1735.380 kb on - strandat 1735.824 kb on + strand, within BPHYT_RS27455at 1735.825 kb on - strand, within BPHYT_RS27455

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,733,462 + +0.1
1,734,006 - BPHYT_RS27445 0.34 -1.4
1,734,121 - BPHYT_RS27445 0.62 -0.3
1,734,271 - -0.6
1,734,271 - +0.2
1,734,543 - BPHYT_RS27450 0.19 +0.7
1,734,622 + BPHYT_RS27450 0.28 +0.9
1,734,623 - BPHYT_RS27450 0.29 +0.3
1,735,189 + +0.3
1,735,267 - -0.6
1,735,380 - +0.3
1,735,824 + BPHYT_RS27455 0.32 +1.3
1,735,825 - BPHYT_RS27455 0.32 -0.4

Or see this region's nucleotide sequence