Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25440

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25435 and BPHYT_RS25440 are separated by 285 nucleotides BPHYT_RS25435: BPHYT_RS25435 - hypothetical protein, at 1,283,677 to 1,283,910 _RS25435 BPHYT_RS25440: BPHYT_RS25440 - alanine dehydrogenase, at 1,284,196 to 1,285,320 _RS25440 Position (kb) 1284 1285 1286Strain fitness (log2 ratio) -1 0 1at 1283.275 kb on - strandat 1283.303 kb on + strandat 1283.432 kb on - strandat 1284.201 kb on - strandat 1285.096 kb on - strand, within BPHYT_RS25440at 1285.283 kb on - strandat 1286.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,283,275 - +0.1
1,283,303 + +0.8
1,283,432 - +0.0
1,284,201 - +0.7
1,285,096 - BPHYT_RS25440 0.80 +0.5
1,285,283 - +0.4
1,286,105 - +0.1

Or see this region's nucleotide sequence