Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23890

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23885 and BPHYT_RS23890 are separated by 21 nucleotidesBPHYT_RS23890 and BPHYT_RS23895 are separated by 65 nucleotides BPHYT_RS23885: BPHYT_RS23885 - ABC transporter permease, at 925,339 to 926,436 _RS23885 BPHYT_RS23890: BPHYT_RS23890 - MFS transporter, at 926,458 to 927,759 _RS23890 BPHYT_RS23895: BPHYT_RS23895 - hypothetical protein, at 927,825 to 928,604 _RS23895 Position (kb) 926 927 928Strain fitness (log2 ratio) -1 0 1at 925.900 kb on + strand, within BPHYT_RS23885at 925.901 kb on - strand, within BPHYT_RS23885at 925.936 kb on + strand, within BPHYT_RS23885at 926.009 kb on - strand, within BPHYT_RS23885at 926.059 kb on + strand, within BPHYT_RS23885at 926.059 kb on + strand, within BPHYT_RS23885at 926.060 kb on - strand, within BPHYT_RS23885at 926.127 kb on - strand, within BPHYT_RS23885at 926.159 kb on - strand, within BPHYT_RS23885at 926.849 kb on + strand, within BPHYT_RS23890at 926.874 kb on - strand, within BPHYT_RS23890at 926.946 kb on - strand, within BPHYT_RS23890at 927.972 kb on + strand, within BPHYT_RS23895at 928.522 kb on + strand, within BPHYT_RS23895at 928.570 kb on - strandat 928.623 kb on + strandat 928.642 kb on - strandat 928.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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925,900 + BPHYT_RS23885 0.51 -0.9
925,901 - BPHYT_RS23885 0.51 -0.4
925,936 + BPHYT_RS23885 0.54 +0.2
926,009 - BPHYT_RS23885 0.61 -0.0
926,059 + BPHYT_RS23885 0.66 -1.4
926,059 + BPHYT_RS23885 0.66 +0.4
926,060 - BPHYT_RS23885 0.66 -0.1
926,127 - BPHYT_RS23885 0.72 -1.2
926,159 - BPHYT_RS23885 0.75 -0.7
926,849 + BPHYT_RS23890 0.30 +0.7
926,874 - BPHYT_RS23890 0.32 +0.7
926,946 - BPHYT_RS23890 0.37 +0.3
927,972 + BPHYT_RS23895 0.19 +0.5
928,522 + BPHYT_RS23895 0.89 -0.0
928,570 - -0.0
928,623 + +0.4
928,642 - -1.1
928,665 - -1.1

Or see this region's nucleotide sequence