Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20040

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20035 and BPHYT_RS20040 are separated by 39 nucleotidesBPHYT_RS20040 and BPHYT_RS20045 are separated by 146 nucleotides BPHYT_RS20035: BPHYT_RS20035 - feruloyl-CoA synthase, at 39,158 to 41,059 _RS20035 BPHYT_RS20040: BPHYT_RS20040 - amidohydrolase, at 41,099 to 41,983 _RS20040 BPHYT_RS20045: BPHYT_RS20045 - farnesyl-diphosphate farnesyltransferase, at 42,130 to 43,176 _RS20045 Position (kb) 41 42Strain fitness (log2 ratio) -1 0 1 2at 40.291 kb on - strand, within BPHYT_RS20035at 40.370 kb on + strand, within BPHYT_RS20035at 40.370 kb on + strand, within BPHYT_RS20035at 40.518 kb on - strand, within BPHYT_RS20035at 40.518 kb on - strand, within BPHYT_RS20035at 40.692 kb on + strand, within BPHYT_RS20035at 41.268 kb on - strand, within BPHYT_RS20040at 41.460 kb on - strand, within BPHYT_RS20040at 41.747 kb on - strand, within BPHYT_RS20040at 41.790 kb on - strand, within BPHYT_RS20040

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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40,291 - BPHYT_RS20035 0.60 +0.3
40,370 + BPHYT_RS20035 0.64 +1.9
40,370 + BPHYT_RS20035 0.64 -0.3
40,518 - BPHYT_RS20035 0.72 -0.4
40,518 - BPHYT_RS20035 0.72 -0.1
40,692 + BPHYT_RS20035 0.81 +0.4
41,268 - BPHYT_RS20040 0.19 -0.0
41,460 - BPHYT_RS20040 0.41 +1.5
41,747 - BPHYT_RS20040 0.73 +1.3
41,790 - BPHYT_RS20040 0.78 -0.0

Or see this region's nucleotide sequence