Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17185

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17175 and BPHYT_RS17180 are separated by 8 nucleotidesBPHYT_RS17180 and BPHYT_RS17185 are separated by 54 nucleotidesBPHYT_RS17185 and BPHYT_RS17190 are separated by 149 nucleotides BPHYT_RS17175: BPHYT_RS17175 - 7,8-dihydro-8-oxoguanine-triphosphatase, at 3,889,896 to 3,890,321 _RS17175 BPHYT_RS17180: BPHYT_RS17180 - ATPase AAA, at 3,890,330 to 3,891,199 _RS17180 BPHYT_RS17185: BPHYT_RS17185 - N-acetylglutamate synthase, at 3,891,254 to 3,892,495 _RS17185 BPHYT_RS17190: BPHYT_RS17190 - protein translocase subunit SecA, at 3,892,645 to 3,895,455 _RS17190 Position (kb) 3891 3892 3893Strain fitness (log2 ratio) -2 -1 0 1 2at 3890.496 kb on + strand, within BPHYT_RS17180at 3890.496 kb on + strand, within BPHYT_RS17180at 3890.497 kb on - strand, within BPHYT_RS17180at 3890.497 kb on - strand, within BPHYT_RS17180at 3890.517 kb on + strand, within BPHYT_RS17180at 3890.517 kb on + strand, within BPHYT_RS17180at 3890.517 kb on + strand, within BPHYT_RS17180at 3890.610 kb on + strand, within BPHYT_RS17180at 3890.610 kb on + strand, within BPHYT_RS17180at 3890.611 kb on - strand, within BPHYT_RS17180at 3890.611 kb on - strand, within BPHYT_RS17180at 3890.631 kb on + strand, within BPHYT_RS17180at 3890.631 kb on + strand, within BPHYT_RS17180at 3890.632 kb on - strand, within BPHYT_RS17180at 3890.632 kb on - strand, within BPHYT_RS17180at 3890.632 kb on - strand, within BPHYT_RS17180at 3890.632 kb on - strand, within BPHYT_RS17180at 3890.632 kb on - strand, within BPHYT_RS17180at 3890.668 kb on - strandat 3890.731 kb on - strand, within BPHYT_RS17180at 3890.731 kb on - strand, within BPHYT_RS17180at 3890.839 kb on + strand, within BPHYT_RS17180at 3890.874 kb on + strand, within BPHYT_RS17180at 3891.210 kb on + strandat 3891.211 kb on - strandat 3891.231 kb on + strandat 3891.232 kb on - strandat 3891.447 kb on + strand, within BPHYT_RS17185at 3891.447 kb on + strand, within BPHYT_RS17185at 3891.448 kb on - strand, within BPHYT_RS17185at 3891.489 kb on + strand, within BPHYT_RS17185at 3891.534 kb on + strand, within BPHYT_RS17185at 3891.534 kb on + strand, within BPHYT_RS17185at 3891.534 kb on + strand, within BPHYT_RS17185at 3891.534 kb on + strand, within BPHYT_RS17185at 3891.535 kb on - strand, within BPHYT_RS17185at 3891.574 kb on - strand, within BPHYT_RS17185at 3891.715 kb on - strand, within BPHYT_RS17185at 3892.042 kb on - strand, within BPHYT_RS17185at 3892.156 kb on + strandat 3892.156 kb on + strand, within BPHYT_RS17185at 3892.156 kb on + strand, within BPHYT_RS17185at 3892.604 kb on + strandat 3892.605 kb on - strandat 3892.605 kb on - strandat 3892.756 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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3,890,496 + BPHYT_RS17180 0.19 +0.5
3,890,496 + BPHYT_RS17180 0.19 +0.1
3,890,497 - BPHYT_RS17180 0.19 +0.8
3,890,497 - BPHYT_RS17180 0.19 -0.6
3,890,517 + BPHYT_RS17180 0.21 -1.5
3,890,517 + BPHYT_RS17180 0.21 -2.1
3,890,517 + BPHYT_RS17180 0.21 +1.4
3,890,610 + BPHYT_RS17180 0.32 +0.8
3,890,610 + BPHYT_RS17180 0.32 -1.4
3,890,611 - BPHYT_RS17180 0.32 -0.5
3,890,611 - BPHYT_RS17180 0.32 +0.3
3,890,631 + BPHYT_RS17180 0.35 +0.9
3,890,631 + BPHYT_RS17180 0.35 +0.4
3,890,632 - BPHYT_RS17180 0.35 -0.1
3,890,632 - BPHYT_RS17180 0.35 +1.0
3,890,632 - BPHYT_RS17180 0.35 +0.6
3,890,632 - BPHYT_RS17180 0.35 +0.1
3,890,632 - BPHYT_RS17180 0.35 +0.6
3,890,668 - +2.4
3,890,731 - BPHYT_RS17180 0.46 +0.5
3,890,731 - BPHYT_RS17180 0.46 +1.0
3,890,839 + BPHYT_RS17180 0.59 -0.1
3,890,874 + BPHYT_RS17180 0.63 -0.1
3,891,210 + -0.6
3,891,211 - -0.2
3,891,231 + -0.9
3,891,232 - +0.6
3,891,447 + BPHYT_RS17185 0.16 -0.4
3,891,447 + BPHYT_RS17185 0.16 -0.9
3,891,448 - BPHYT_RS17185 0.16 -0.9
3,891,489 + BPHYT_RS17185 0.19 -0.6
3,891,534 + BPHYT_RS17185 0.23 -1.0
3,891,534 + BPHYT_RS17185 0.23 -1.4
3,891,534 + BPHYT_RS17185 0.23 +0.6
3,891,534 + BPHYT_RS17185 0.23 -1.2
3,891,535 - BPHYT_RS17185 0.23 -0.4
3,891,574 - BPHYT_RS17185 0.26 +0.1
3,891,715 - BPHYT_RS17185 0.37 -0.4
3,892,042 - BPHYT_RS17185 0.63 -1.0
3,892,156 + -2.3
3,892,156 + BPHYT_RS17185 0.73 -1.5
3,892,156 + BPHYT_RS17185 0.73 -0.7
3,892,604 + +1.0
3,892,605 - +0.3
3,892,605 - +0.9
3,892,756 - +0.4

Or see this region's nucleotide sequence