Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07050

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07045 and BPHYT_RS07050 are separated by 413 nucleotidesBPHYT_RS07050 and BPHYT_RS07055 are separated by 169 nucleotides BPHYT_RS07045: BPHYT_RS07045 - chemotaxis protein CheV, at 1,592,992 to 1,593,969 _RS07045 BPHYT_RS07050: BPHYT_RS07050 - membrane protein, at 1,594,383 to 1,594,943 _RS07050 BPHYT_RS07055: BPHYT_RS07055 - sulfotransferase, at 1,595,113 to 1,596,837 _RS07055 Position (kb) 1594 1595Strain fitness (log2 ratio) -2 -1 0 1at 1593.460 kb on - strand, within BPHYT_RS07045at 1593.500 kb on - strand, within BPHYT_RS07045at 1593.500 kb on - strand, within BPHYT_RS07045at 1593.545 kb on - strand, within BPHYT_RS07045at 1594.309 kb on + strandat 1594.309 kb on + strandat 1594.382 kb on + strandat 1594.383 kb on - strandat 1594.383 kb on - strandat 1594.383 kb on - strandat 1594.761 kb on + strand, within BPHYT_RS07050at 1594.762 kb on - strand, within BPHYT_RS07050at 1594.890 kb on + strandat 1594.891 kb on - strandat 1594.919 kb on + strandat 1595.927 kb on - strand, within BPHYT_RS07055

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,593,460 - BPHYT_RS07045 0.48 -0.2
1,593,500 - BPHYT_RS07045 0.52 -0.1
1,593,500 - BPHYT_RS07045 0.52 +0.1
1,593,545 - BPHYT_RS07045 0.57 +0.1
1,594,309 + -0.1
1,594,309 + -1.4
1,594,382 + +0.7
1,594,383 - +0.9
1,594,383 - +0.5
1,594,383 - +0.6
1,594,761 + BPHYT_RS07050 0.67 -1.0
1,594,762 - BPHYT_RS07050 0.68 -1.8
1,594,890 + -0.0
1,594,891 - -0.1
1,594,919 + +0.3
1,595,927 - BPHYT_RS07055 0.47 +0.0

Or see this region's nucleotide sequence