Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0782 and Psest_0783 are separated by 107 nucleotides Psest_0783 and Psest_0784 are separated by 126 nucleotides
Psest_0782: Psest_0782 - Transcriptional regulator of aromatic amino acids metabolism, at 850,651 to 852,210
_0782
Psest_0783: Psest_0783 - PAS domain S-box, at 852,318 to 856,490
_0783
Psest_0784: Psest_0784 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 856,617 to 857,993
_0784
Position (kb) 852
853
854
855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 851.665 kb on + strand, within Psest_0782 at 851.665 kb on + strand, within Psest_0782 at 851.665 kb on + strand, within Psest_0782 at 851.666 kb on - strand, within Psest_0782 at 851.666 kb on - strand, within Psest_0782 at 851.666 kb on - strand, within Psest_0782 at 851.746 kb on + strand, within Psest_0782 at 851.776 kb on - strand, within Psest_0782 at 852.793 kb on + strand, within Psest_0783 at 852.793 kb on + strand, within Psest_0783 at 853.091 kb on - strand, within Psest_0783 at 853.091 kb on - strand, within Psest_0783 at 853.091 kb on - strand, within Psest_0783 at 853.298 kb on + strand, within Psest_0783 at 853.298 kb on + strand, within Psest_0783 at 853.298 kb on + strand, within Psest_0783 at 853.299 kb on - strand, within Psest_0783 at 853.540 kb on - strand, within Psest_0783 at 853.681 kb on + strand, within Psest_0783 at 853.681 kb on + strand, within Psest_0783 at 853.681 kb on + strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.682 kb on - strand, within Psest_0783 at 853.795 kb on + strand, within Psest_0783 at 853.908 kb on - strand, within Psest_0783 at 853.948 kb on + strand, within Psest_0783 at 853.948 kb on + strand, within Psest_0783 at 853.948 kb on + strand, within Psest_0783 at 853.948 kb on + strand, within Psest_0783 at 854.028 kb on + strand, within Psest_0783 at 854.028 kb on + strand, within Psest_0783 at 854.028 kb on + strand, within Psest_0783 at 854.029 kb on - strand, within Psest_0783 at 854.029 kb on - strand, within Psest_0783 at 854.132 kb on + strand, within Psest_0783 at 854.133 kb on - strand, within Psest_0783 at 854.524 kb on + strand, within Psest_0783 at 854.524 kb on + strand, within Psest_0783 at 854.525 kb on - strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.575 kb on + strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.576 kb on - strand, within Psest_0783 at 854.647 kb on + strand, within Psest_0783 at 854.647 kb on + strand, within Psest_0783 at 854.648 kb on - strand, within Psest_0783 at 854.725 kb on + strand, within Psest_0783 at 854.725 kb on + strand, within Psest_0783 at 854.726 kb on - strand, within Psest_0783 at 854.804 kb on - strand, within Psest_0783 at 854.962 kb on + strand, within Psest_0783 at 854.962 kb on + strand, within Psest_0783 at 854.962 kb on + strand, within Psest_0783 at 854.962 kb on + strand, within Psest_0783 at 854.963 kb on - strand, within Psest_0783 at 854.963 kb on - strand, within Psest_0783 at 854.979 kb on - strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.106 kb on + strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.107 kb on - strand, within Psest_0783 at 855.241 kb on + strand, within Psest_0783 at 855.412 kb on + strand, within Psest_0783 at 855.412 kb on + strand, within Psest_0783 at 855.619 kb on + strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.620 kb on - strand, within Psest_0783 at 855.692 kb on - strand, within Psest_0783 at 855.692 kb on - strand, within Psest_0783 at 855.692 kb on - strand, within Psest_0783 at 855.774 kb on - strand, within Psest_0783 at 856.065 kb on + strand, within Psest_0783 at 856.065 kb on + strand, within Psest_0783 at 856.065 kb on + strand, within Psest_0783 at 856.066 kb on - strand, within Psest_0783 at 856.085 kb on + strand at 856.171 kb on + strand at 856.171 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.213 kb on + strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.214 kb on - strand at 856.581 kb on - strand at 856.581 kb on - strand at 856.581 kb on - strand at 856.601 kb on + strand at 856.666 kb on + strand at 856.666 kb on + strand at 856.667 kb on - strand at 856.667 kb on - strand at 856.667 kb on - strand at 856.667 kb on - strand at 856.667 kb on - strand at 857.005 kb on + strand, within Psest_0784 at 857.006 kb on - strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.083 kb on + strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.084 kb on - strand, within Psest_0784 at 857.086 kb on + strand, within Psest_0784 at 857.086 kb on + strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.087 kb on - strand, within Psest_0784 at 857.182 kb on + strand, within Psest_0784 at 857.183 kb on - strand, within Psest_0784
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 851,665 + Psest_0782 0.65 +0.5 851,665 + Psest_0782 0.65 -0.5 851,665 + Psest_0782 0.65 +0.5 851,666 - Psest_0782 0.65 -1.5 851,666 - Psest_0782 0.65 -0.1 851,666 - Psest_0782 0.65 +1.5 851,746 + Psest_0782 0.70 -0.5 851,776 - Psest_0782 0.72 +0.5 852,793 + Psest_0783 0.11 +0.3 852,793 + Psest_0783 0.11 -0.1 853,091 - Psest_0783 0.19 +1.2 853,091 - Psest_0783 0.19 +1.6 853,091 - Psest_0783 0.19 -0.4 853,298 + Psest_0783 0.23 -1.5 853,298 + Psest_0783 0.23 -1.5 853,298 + Psest_0783 0.23 -1.9 853,299 - Psest_0783 0.24 +1.2 853,540 - Psest_0783 0.29 +1.0 853,681 + Psest_0783 0.33 -0.3 853,681 + Psest_0783 0.33 -1.1 853,681 + Psest_0783 0.33 -0.6 853,682 - Psest_0783 0.33 +1.0 853,682 - Psest_0783 0.33 +0.8 853,682 - Psest_0783 0.33 +1.0 853,682 - Psest_0783 0.33 -1.1 853,682 - Psest_0783 0.33 -1.5 853,795 + Psest_0783 0.35 +2.0 853,908 - Psest_0783 0.38 +0.8 853,948 + Psest_0783 0.39 -0.3 853,948 + Psest_0783 0.39 +0.0 853,948 + Psest_0783 0.39 +0.2 853,948 + Psest_0783 0.39 -0.0 854,028 + Psest_0783 0.41 +0.5 854,028 + Psest_0783 0.41 -2.1 854,028 + Psest_0783 0.41 +1.0 854,029 - Psest_0783 0.41 -1.5 854,029 - Psest_0783 0.41 -1.1 854,132 + Psest_0783 0.43 -0.2 854,133 - Psest_0783 0.43 -0.3 854,524 + Psest_0783 0.53 +0.5 854,524 + Psest_0783 0.53 -1.5 854,525 - Psest_0783 0.53 -0.1 854,575 + Psest_0783 0.54 +1.7 854,575 + Psest_0783 0.54 -1.5 854,575 + Psest_0783 0.54 -1.0 854,575 + Psest_0783 0.54 +1.9 854,575 + Psest_0783 0.54 -0.5 854,576 - Psest_0783 0.54 -1.9 854,576 - Psest_0783 0.54 +0.5 854,576 - Psest_0783 0.54 +1.0 854,576 - Psest_0783 0.54 +2.2 854,576 - Psest_0783 0.54 -2.0 854,576 - Psest_0783 0.54 -1.1 854,576 - Psest_0783 0.54 -0.3 854,576 - Psest_0783 0.54 -0.6 854,576 - Psest_0783 0.54 +0.5 854,576 - Psest_0783 0.54 +0.5 854,576 - Psest_0783 0.54 +0.2 854,647 + Psest_0783 0.56 -2.1 854,647 + Psest_0783 0.56 +0.6 854,648 - Psest_0783 0.56 -2.0 854,725 + Psest_0783 0.58 +0.2 854,725 + Psest_0783 0.58 +0.9 854,726 - Psest_0783 0.58 +1.1 854,804 - Psest_0783 0.60 +0.0 854,962 + Psest_0783 0.63 -2.0 854,962 + Psest_0783 0.63 +0.0 854,962 + Psest_0783 0.63 -0.0 854,962 + Psest_0783 0.63 -2.3 854,963 - Psest_0783 0.63 -3.5 854,963 - Psest_0783 0.63 +3.9 854,979 - Psest_0783 0.64 +2.5 855,106 + Psest_0783 0.67 +0.0 855,106 + Psest_0783 0.67 +2.9 855,106 + Psest_0783 0.67 +1.0 855,106 + Psest_0783 0.67 -1.1 855,106 + Psest_0783 0.67 +1.3 855,106 + Psest_0783 0.67 +0.6 855,106 + Psest_0783 0.67 +0.9 855,106 + Psest_0783 0.67 -0.5 855,107 - Psest_0783 0.67 +0.2 855,107 - Psest_0783 0.67 -1.1 855,107 - Psest_0783 0.67 -0.2 855,107 - Psest_0783 0.67 +0.5 855,107 - Psest_0783 0.67 -0.3 855,107 - Psest_0783 0.67 -0.3 855,107 - Psest_0783 0.67 +1.5 855,241 + Psest_0783 0.70 +0.6 855,412 + Psest_0783 0.74 +0.1 855,412 + Psest_0783 0.74 -2.1 855,619 + Psest_0783 0.79 +0.2 855,620 - Psest_0783 0.79 +1.9 855,620 - Psest_0783 0.79 -0.0 855,620 - Psest_0783 0.79 -1.1 855,620 - Psest_0783 0.79 +0.4 855,692 - Psest_0783 0.81 -1.9 855,692 - Psest_0783 0.81 +1.8 855,692 - Psest_0783 0.81 -0.5 855,774 - Psest_0783 0.83 +0.1 856,065 + Psest_0783 0.90 -0.5 856,065 + Psest_0783 0.90 +0.5 856,065 + Psest_0783 0.90 -0.2 856,066 - Psest_0783 0.90 -0.9 856,085 + +1.9 856,171 + +1.7 856,171 + +0.0 856,213 + -0.5 856,213 + -2.5 856,213 + +1.3 856,213 + +0.1 856,213 + -0.8 856,213 + -0.4 856,213 + +0.5 856,213 + -0.9 856,213 + -0.5 856,213 + +0.5 856,213 + -0.3 856,213 + +1.5 856,213 + -1.5 856,214 - -1.1 856,214 - +0.5 856,214 - -1.1 856,214 - -0.5 856,214 - -2.3 856,214 - +0.8 856,214 - +0.8 856,214 - -1.8 856,214 - -1.2 856,581 - -0.1 856,581 - +2.0 856,581 - -0.8 856,601 + -0.1 856,666 + -0.3 856,666 + +1.0 856,667 - +0.5 856,667 - -2.3 856,667 - +1.1 856,667 - +0.1 856,667 - +0.5 857,005 + Psest_0784 0.28 -1.1 857,006 - Psest_0784 0.28 -0.2 857,083 + Psest_0784 0.34 -0.1 857,083 + Psest_0784 0.34 -1.1 857,083 + Psest_0784 0.34 -1.1 857,083 + Psest_0784 0.34 -0.3 857,083 + Psest_0784 0.34 +0.6 857,083 + Psest_0784 0.34 +1.0 857,083 + Psest_0784 0.34 +1.0 857,083 + Psest_0784 0.34 -1.1 857,083 + Psest_0784 0.34 -1.1 857,083 + Psest_0784 0.34 +1.5 857,083 + Psest_0784 0.34 -1.0 857,083 + Psest_0784 0.34 +1.6 857,083 + Psest_0784 0.34 -2.9 857,083 + Psest_0784 0.34 -1.5 857,083 + Psest_0784 0.34 -0.5 857,083 + Psest_0784 0.34 -1.1 857,083 + Psest_0784 0.34 +0.9 857,083 + Psest_0784 0.34 -0.5 857,083 + Psest_0784 0.34 +1.3 857,083 + Psest_0784 0.34 -0.4 857,083 + Psest_0784 0.34 -1.1 857,084 - Psest_0784 0.34 -1.5 857,084 - Psest_0784 0.34 +0.7 857,084 - Psest_0784 0.34 -1.9 857,084 - Psest_0784 0.34 +0.2 857,084 - Psest_0784 0.34 +2.5 857,084 - Psest_0784 0.34 +1.5 857,084 - Psest_0784 0.34 +0.5 857,084 - Psest_0784 0.34 -1.1 857,084 - Psest_0784 0.34 +0.6 857,084 - Psest_0784 0.34 +0.7 857,084 - Psest_0784 0.34 -3.5 857,084 - Psest_0784 0.34 +0.0 857,084 - Psest_0784 0.34 +0.3 857,084 - Psest_0784 0.34 +0.9 857,084 - Psest_0784 0.34 +0.5 857,084 - Psest_0784 0.34 +2.8 857,084 - Psest_0784 0.34 -1.4 857,084 - Psest_0784 0.34 -1.5 857,086 + Psest_0784 0.34 -0.3 857,086 + Psest_0784 0.34 -0.5 857,087 - Psest_0784 0.34 -0.1 857,087 - Psest_0784 0.34 -0.7 857,087 - Psest_0784 0.34 -0.9 857,087 - Psest_0784 0.34 +0.5 857,182 + Psest_0784 0.41 +0.7 857,183 - Psest_0784 0.41 +0.9
Or see this region's nucleotide sequence