Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0652 and Psest_0653 are separated by 153 nucleotides Psest_0653 and Psest_0654 are separated by 19 nucleotides Psest_0654 and Psest_0655 are separated by 1 nucleotides
Psest_0652: Psest_0652 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 709,017 to 709,952
_0652
Psest_0653: Psest_0653 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 710,106 to 711,161
_0653
Psest_0654: Psest_0654 - Methylase of chemotaxis methyl-accepting proteins, at 711,181 to 711,987
_0654
Psest_0655: Psest_0655 - Chemotaxis signal transduction protein, at 711,989 to 712,486
_0655
Position (kb) 710
711
712 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 709.265 kb on + strand, within Psest_0652 at 709.265 kb on + strand, within Psest_0652 at 709.661 kb on + strand, within Psest_0652 at 709.662 kb on - strand, within Psest_0652 at 709.768 kb on - strand, within Psest_0652 at 709.840 kb on + strand, within Psest_0652 at 709.852 kb on + strand, within Psest_0652 at 709.952 kb on + strand at 709.952 kb on + strand at 709.952 kb on + strand at 709.953 kb on - strand at 710.031 kb on - strand at 710.031 kb on - strand at 710.422 kb on + strand, within Psest_0653 at 711.114 kb on + strand at 711.115 kb on - strand at 711.170 kb on - strand at 711.184 kb on + strand at 711.332 kb on + strand, within Psest_0654 at 711.332 kb on + strand, within Psest_0654 at 711.333 kb on - strand, within Psest_0654 at 711.333 kb on - strand, within Psest_0654 at 711.333 kb on - strand, within Psest_0654 at 711.559 kb on + strand, within Psest_0654 at 711.559 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.635 kb on + strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.636 kb on - strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.743 kb on + strand, within Psest_0654 at 711.744 kb on - strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.817 kb on + strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.818 kb on - strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.821 kb on + strand, within Psest_0654 at 711.822 kb on - strand, within Psest_0654 at 711.831 kb on - strand, within Psest_0654
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 709,265 + Psest_0652 0.26 -0.0 709,265 + Psest_0652 0.26 -1.0 709,661 + Psest_0652 0.69 -0.4 709,662 - Psest_0652 0.69 -2.1 709,768 - Psest_0652 0.80 +2.8 709,840 + Psest_0652 0.88 -0.7 709,852 + Psest_0652 0.89 -2.5 709,952 + +1.0 709,952 + +0.9 709,952 + -0.1 709,953 - -1.1 710,031 - +0.0 710,031 - -2.1 710,422 + Psest_0653 0.30 -0.0 711,114 + +0.7 711,115 - +0.5 711,170 - +5.1 711,184 + -0.3 711,332 + Psest_0654 0.19 -0.3 711,332 + Psest_0654 0.19 -0.5 711,333 - Psest_0654 0.19 -1.1 711,333 - Psest_0654 0.19 -0.3 711,333 - Psest_0654 0.19 -0.7 711,559 + Psest_0654 0.47 -1.7 711,559 + Psest_0654 0.47 -1.9 711,635 + Psest_0654 0.56 -0.0 711,635 + Psest_0654 0.56 -0.1 711,636 - Psest_0654 0.56 +0.0 711,636 - Psest_0654 0.56 -1.9 711,636 - Psest_0654 0.56 +1.5 711,743 + Psest_0654 0.70 +0.5 711,743 + Psest_0654 0.70 -0.8 711,744 - Psest_0654 0.70 +0.5 711,817 + Psest_0654 0.79 +0.3 711,817 + Psest_0654 0.79 -1.1 711,817 + Psest_0654 0.79 +0.1 711,818 - Psest_0654 0.79 +1.5 711,818 - Psest_0654 0.79 -0.2 711,818 - Psest_0654 0.79 -0.2 711,818 - Psest_0654 0.79 +1.5 711,818 - Psest_0654 0.79 +2.0 711,821 + Psest_0654 0.79 +0.7 711,821 + Psest_0654 0.79 +3.5 711,821 + Psest_0654 0.79 -2.0 711,822 - Psest_0654 0.79 +1.8 711,831 - Psest_0654 0.81 +0.5
Or see this region's nucleotide sequence