Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0652

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0651 and Psest_0652 overlap by 7 nucleotidesPsest_0652 and Psest_0653 are separated by 153 nucleotides Psest_0651: Psest_0651 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 706,630 to 709,023 _0651 Psest_0652: Psest_0652 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 709,017 to 709,952 _0652 Psest_0653: Psest_0653 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 710,106 to 711,161 _0653 Position (kb) 709 710Strain fitness (log2 ratio) -2 -1 0 1 2 3at 708.142 kb on - strand, within Psest_0651at 708.447 kb on - strand, within Psest_0651at 708.503 kb on + strand, within Psest_0651at 708.503 kb on + strand, within Psest_0651at 708.504 kb on - strand, within Psest_0651at 708.504 kb on - strand, within Psest_0651at 708.552 kb on - strand, within Psest_0651at 708.552 kb on - strand, within Psest_0651at 708.552 kb on - strand, within Psest_0651at 708.611 kb on + strand, within Psest_0651at 708.611 kb on + strand, within Psest_0651at 708.612 kb on - strand, within Psest_0651at 709.003 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.093 kb on + strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.094 kb on - strandat 709.265 kb on + strand, within Psest_0652at 709.265 kb on + strand, within Psest_0652at 709.661 kb on + strand, within Psest_0652at 709.662 kb on - strand, within Psest_0652at 709.768 kb on - strand, within Psest_0652at 709.840 kb on + strand, within Psest_0652at 709.852 kb on + strand, within Psest_0652at 709.952 kb on + strandat 709.952 kb on + strandat 709.952 kb on + strandat 709.953 kb on - strandat 710.031 kb on - strandat 710.031 kb on - strandat 710.422 kb on + strand, within Psest_0653

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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708,142 - Psest_0651 0.63 +1.3
708,447 - Psest_0651 0.76 -2.6
708,503 + Psest_0651 0.78 -1.3
708,503 + Psest_0651 0.78 -2.2
708,504 - Psest_0651 0.78 -2.0
708,504 - Psest_0651 0.78 -1.3
708,552 - Psest_0651 0.80 -0.5
708,552 - Psest_0651 0.80 -1.1
708,552 - Psest_0651 0.80 +0.9
708,611 + Psest_0651 0.83 +0.7
708,611 + Psest_0651 0.83 +2.6
708,612 - Psest_0651 0.83 +0.5
709,003 + -0.7
709,093 + +0.5
709,093 + -1.2
709,093 + +0.5
709,093 + +0.7
709,093 + +1.5
709,093 + +0.9
709,093 + -1.1
709,094 - +0.2
709,094 - +0.8
709,094 - -2.0
709,094 - +1.7
709,094 - -0.7
709,094 - -1.9
709,094 - -0.5
709,094 - +0.2
709,265 + Psest_0652 0.26 -0.0
709,265 + Psest_0652 0.26 -1.0
709,661 + Psest_0652 0.69 -0.4
709,662 - Psest_0652 0.69 -2.1
709,768 - Psest_0652 0.80 +2.8
709,840 + Psest_0652 0.88 -0.7
709,852 + Psest_0652 0.89 -2.5
709,952 + +1.0
709,952 + +0.9
709,952 + -0.1
709,953 - -1.1
710,031 - +0.0
710,031 - -2.1
710,422 + Psest_0653 0.30 -0.0

Or see this region's nucleotide sequence