Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4206

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4205 and Psest_4206 are separated by 72 nucleotidesPsest_4206 and Psest_4207 are separated by 120 nucleotides Psest_4205: Psest_4205 - NAD/NADP transhydrogenase beta subunit, at 4,382,926 to 4,384,362 _4205 Psest_4206: Psest_4206 - Putative NADPH-quinone reductase (modulator of drug activity B), at 4,384,435 to 4,385,025 _4206 Psest_4207: Psest_4207 - Predicted Na+-dependent transporter, at 4,385,146 to 4,386,135 _4207 Position (kb) 4384 4385 4386Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4383.508 kb on + strand, within Psest_4205at 4383.508 kb on + strand, within Psest_4205at 4383.634 kb on + strand, within Psest_4205at 4383.634 kb on + strand, within Psest_4205at 4383.635 kb on - strand, within Psest_4205at 4383.635 kb on - strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.733 kb on + strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.734 kb on - strand, within Psest_4205at 4383.994 kb on + strand, within Psest_4205at 4383.995 kb on - strand, within Psest_4205at 4384.040 kb on + strand, within Psest_4205at 4384.040 kb on + strand, within Psest_4205at 4384.040 kb on + strand, within Psest_4205at 4384.040 kb on + strand, within Psest_4205at 4384.040 kb on + strand, within Psest_4205at 4384.041 kb on - strand, within Psest_4205at 4384.041 kb on - strand, within Psest_4205at 4384.041 kb on - strand, within Psest_4205at 4384.041 kb on - strand, within Psest_4205at 4384.041 kb on - strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.213 kb on + strand, within Psest_4205at 4384.214 kb on - strand, within Psest_4205at 4384.288 kb on + strandat 4384.288 kb on + strandat 4384.288 kb on + strandat 4384.288 kb on + strandat 4384.288 kb on + strandat 4384.288 kb on + strandat 4384.288 kb on + strandat 4384.289 kb on - strandat 4384.289 kb on - strandat 4384.289 kb on - strandat 4384.289 kb on - strandat 4384.289 kb on - strandat 4384.584 kb on - strand, within Psest_4206at 4384.584 kb on - strand, within Psest_4206at 4384.670 kb on + strand, within Psest_4206at 4384.670 kb on + strand, within Psest_4206at 4384.670 kb on + strand, within Psest_4206at 4384.670 kb on + strand, within Psest_4206at 4384.671 kb on - strand, within Psest_4206at 4384.671 kb on - strand, within Psest_4206at 4384.671 kb on - strand, within Psest_4206at 4384.703 kb on + strand, within Psest_4206at 4384.703 kb on + strand, within Psest_4206at 4384.703 kb on + strand, within Psest_4206at 4384.704 kb on - strand, within Psest_4206at 4384.704 kb on - strand, within Psest_4206at 4384.704 kb on - strand, within Psest_4206at 4384.784 kb on + strand, within Psest_4206at 4384.784 kb on + strand, within Psest_4206at 4384.785 kb on - strand, within Psest_4206at 4384.785 kb on - strand, within Psest_4206at 4384.832 kb on + strand, within Psest_4206at 4384.832 kb on + strand, within Psest_4206at 4384.832 kb on + strand, within Psest_4206at 4384.833 kb on - strand, within Psest_4206at 4384.833 kb on - strand, within Psest_4206at 4384.833 kb on - strand, within Psest_4206at 4384.967 kb on + strandat 4384.968 kb on - strandat 4384.968 kb on - strandat 4384.968 kb on - strandat 4385.008 kb on + strandat 4385.133 kb on + strandat 4385.134 kb on - strandat 4385.504 kb on + strand, within Psest_4207at 4385.504 kb on + strand, within Psest_4207at 4385.504 kb on + strand, within Psest_4207at 4385.504 kb on + strand, within Psest_4207at 4385.505 kb on - strand, within Psest_4207at 4385.505 kb on - strand, within Psest_4207at 4385.505 kb on - strand, within Psest_4207at 4385.505 kb on - strand, within Psest_4207at 4385.757 kb on + strand, within Psest_4207at 4385.823 kb on - strand, within Psest_4207at 4385.823 kb on - strand, within Psest_4207at 4385.823 kb on - strand, within Psest_4207at 4385.823 kb on - strand, within Psest_4207at 4385.837 kb on + strand, within Psest_4207at 4385.838 kb on - strand, within Psest_4207at 4385.838 kb on - strand, within Psest_4207at 4385.838 kb on - strand, within Psest_4207at 4385.838 kb on - strand, within Psest_4207at 4385.838 kb on - strand, within Psest_4207at 4385.838 kb on - strand, within Psest_4207at 4385.838 kb on - strand, within Psest_4207at 4385.838 kb on - strand, within Psest_4207

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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4,383,508 + Psest_4205 0.41 -0.4
4,383,508 + Psest_4205 0.41 -1.2
4,383,634 + Psest_4205 0.49 +0.6
4,383,634 + Psest_4205 0.49 +2.2
4,383,635 - Psest_4205 0.49 +2.0
4,383,635 - Psest_4205 0.49 -0.0
4,383,733 + Psest_4205 0.56 -1.4
4,383,733 + Psest_4205 0.56 -2.1
4,383,733 + Psest_4205 0.56 +0.6
4,383,733 + Psest_4205 0.56 -0.0
4,383,733 + Psest_4205 0.56 +2.3
4,383,733 + Psest_4205 0.56 -1.4
4,383,733 + Psest_4205 0.56 +2.2
4,383,733 + Psest_4205 0.56 -1.0
4,383,733 + Psest_4205 0.56 -0.0
4,383,733 + Psest_4205 0.56 +1.5
4,383,733 + Psest_4205 0.56 +0.8
4,383,733 + Psest_4205 0.56 -1.7
4,383,733 + Psest_4205 0.56 +0.6
4,383,734 - Psest_4205 0.56 +1.8
4,383,734 - Psest_4205 0.56 -0.2
4,383,734 - Psest_4205 0.56 +0.7
4,383,734 - Psest_4205 0.56 -1.5
4,383,734 - Psest_4205 0.56 +1.1
4,383,734 - Psest_4205 0.56 +0.8
4,383,734 - Psest_4205 0.56 -2.6
4,383,734 - Psest_4205 0.56 +0.6
4,383,734 - Psest_4205 0.56 -0.7
4,383,734 - Psest_4205 0.56 -2.7
4,383,734 - Psest_4205 0.56 -0.6
4,383,994 + Psest_4205 0.74 +0.2
4,383,995 - Psest_4205 0.74 +1.4
4,384,040 + Psest_4205 0.78 -1.0
4,384,040 + Psest_4205 0.78 -0.7
4,384,040 + Psest_4205 0.78 +0.6
4,384,040 + Psest_4205 0.78 +0.6
4,384,040 + Psest_4205 0.78 +1.3
4,384,041 - Psest_4205 0.78 +1.6
4,384,041 - Psest_4205 0.78 +0.6
4,384,041 - Psest_4205 0.78 +1.4
4,384,041 - Psest_4205 0.78 -0.2
4,384,041 - Psest_4205 0.78 +2.2
4,384,213 + Psest_4205 0.90 +0.9
4,384,213 + Psest_4205 0.90 -2.2
4,384,213 + Psest_4205 0.90 +4.3
4,384,213 + Psest_4205 0.90 -0.8
4,384,213 + Psest_4205 0.90 +1.2
4,384,213 + Psest_4205 0.90 +1.2
4,384,213 + Psest_4205 0.90 +0.2
4,384,213 + Psest_4205 0.90 +0.4
4,384,213 + Psest_4205 0.90 -0.8
4,384,213 + Psest_4205 0.90 -1.0
4,384,214 - Psest_4205 0.90 -2.6
4,384,288 + -0.7
4,384,288 + -0.7
4,384,288 + -0.2
4,384,288 + +1.2
4,384,288 + +1.2
4,384,288 + -1.4
4,384,288 + -0.0
4,384,289 - +3.2
4,384,289 - -1.4
4,384,289 - +2.2
4,384,289 - -0.4
4,384,289 - -0.4
4,384,584 - Psest_4206 0.25 -1.3
4,384,584 - Psest_4206 0.25 -1.7
4,384,670 + Psest_4206 0.40 +0.6
4,384,670 + Psest_4206 0.40 +1.0
4,384,670 + Psest_4206 0.40 -1.0
4,384,670 + Psest_4206 0.40 -1.3
4,384,671 - Psest_4206 0.40 +1.0
4,384,671 - Psest_4206 0.40 -1.3
4,384,671 - Psest_4206 0.40 -0.0
4,384,703 + Psest_4206 0.45 +1.0
4,384,703 + Psest_4206 0.45 -2.2
4,384,703 + Psest_4206 0.45 +1.2
4,384,704 - Psest_4206 0.46 +0.1
4,384,704 - Psest_4206 0.46 -1.2
4,384,704 - Psest_4206 0.46 +0.1
4,384,784 + Psest_4206 0.59 -0.1
4,384,784 + Psest_4206 0.59 +0.1
4,384,785 - Psest_4206 0.59 +0.2
4,384,785 - Psest_4206 0.59 +0.6
4,384,832 + Psest_4206 0.67 -1.9
4,384,832 + Psest_4206 0.67 -0.6
4,384,832 + Psest_4206 0.67 +1.7
4,384,833 - Psest_4206 0.67 -0.0
4,384,833 - Psest_4206 0.67 +2.3
4,384,833 - Psest_4206 0.67 +1.3
4,384,967 + -0.7
4,384,968 - +1.9
4,384,968 - -2.0
4,384,968 - +0.6
4,385,008 + -0.9
4,385,133 + -1.0
4,385,134 - +0.3
4,385,504 + Psest_4207 0.36 -1.7
4,385,504 + Psest_4207 0.36 -0.4
4,385,504 + Psest_4207 0.36 +0.7
4,385,504 + Psest_4207 0.36 +0.8
4,385,505 - Psest_4207 0.36 -2.7
4,385,505 - Psest_4207 0.36 +0.4
4,385,505 - Psest_4207 0.36 -0.2
4,385,505 - Psest_4207 0.36 -0.2
4,385,757 + Psest_4207 0.62 -0.0
4,385,823 - Psest_4207 0.68 +2.9
4,385,823 - Psest_4207 0.68 -0.6
4,385,823 - Psest_4207 0.68 +0.3
4,385,823 - Psest_4207 0.68 +1.6
4,385,837 + Psest_4207 0.70 +3.8
4,385,838 - Psest_4207 0.70 +1.5
4,385,838 - Psest_4207 0.70 +0.8
4,385,838 - Psest_4207 0.70 +1.6
4,385,838 - Psest_4207 0.70 -0.4
4,385,838 - Psest_4207 0.70 -0.4
4,385,838 - Psest_4207 0.70 -1.4
4,385,838 - Psest_4207 0.70 +0.6
4,385,838 - Psest_4207 0.70 -2.0

Or see this region's nucleotide sequence