Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0302 and Psest_0303 overlap by 8 nucleotides Psest_0303 and Psest_0304 overlap by 4 nucleotides Psest_0304 and Psest_0305 are separated by 24 nucleotides
Psest_0302: Psest_0302 - Chemotaxis protein histidine kinase and related kinases, at 315,787 to 323,013
_0302
Psest_0303: Psest_0303 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 323,006 to 324,058
_0303
Psest_0304: Psest_0304 - Chemotaxis signal transduction protein, at 324,055 to 324,525
_0304
Psest_0305: Psest_0305 - RNA methyltransferase, RsmE family, at 324,550 to 325,266
_0305
Position (kb) 323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 322.168 kb on + strand, within Psest_0302 at 322.168 kb on + strand, within Psest_0302 at 322.169 kb on - strand, within Psest_0302 at 322.169 kb on - strand, within Psest_0302 at 322.186 kb on + strand, within Psest_0302 at 322.187 kb on - strand, within Psest_0302 at 322.203 kb on + strand, within Psest_0302 at 322.204 kb on - strand, within Psest_0302 at 322.204 kb on - strand, within Psest_0302 at 322.204 kb on - strand, within Psest_0302 at 322.215 kb on + strand, within Psest_0302 at 322.215 kb on + strand, within Psest_0302 at 322.216 kb on - strand, within Psest_0302 at 322.234 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.249 kb on + strand, within Psest_0302 at 322.250 kb on - strand, within Psest_0302 at 322.250 kb on - strand, within Psest_0302 at 322.252 kb on + strand, within Psest_0302 at 322.252 kb on + strand, within Psest_0302 at 322.253 kb on - strand, within Psest_0302 at 322.279 kb on + strand, within Psest_0302 at 322.295 kb on - strand at 322.567 kb on - strand at 322.841 kb on + strand at 322.841 kb on + strand at 322.842 kb on - strand at 322.842 kb on - strand at 322.842 kb on - strand at 322.893 kb on + strand at 322.942 kb on + strand at 322.942 kb on + strand at 322.942 kb on + strand at 322.943 kb on - strand at 322.943 kb on - strand at 322.943 kb on - strand at 322.943 kb on - strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.029 kb on + strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.030 kb on - strand at 323.031 kb on + strand at 323.031 kb on + strand at 323.418 kb on + strand, within Psest_0303 at 323.463 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.751 kb on - strand, within Psest_0303 at 323.751 kb on - strand, within Psest_0303 at 323.751 kb on - strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.960 kb on + strand at 323.960 kb on + strand at 323.960 kb on + strand at 323.960 kb on + strand at 323.961 kb on - strand at 323.961 kb on - strand at 323.961 kb on - strand at 323.961 kb on - strand at 323.961 kb on - strand at 324.049 kb on + strand at 324.050 kb on - strand at 325.053 kb on + strand, within Psest_0305 at 325.053 kb on + strand, within Psest_0305 at 325.053 kb on + strand, within Psest_0305 at 325.053 kb on + strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 322,168 + Psest_0302 0.88 +0.2 322,168 + Psest_0302 0.88 -0.0 322,169 - Psest_0302 0.88 -0.8 322,169 - Psest_0302 0.88 -0.8 322,186 + Psest_0302 0.89 -2.8 322,187 - Psest_0302 0.89 -2.0 322,203 + Psest_0302 0.89 -1.5 322,204 - Psest_0302 0.89 +0.5 322,204 - Psest_0302 0.89 +2.4 322,204 - Psest_0302 0.89 -1.5 322,215 + Psest_0302 0.89 +2.4 322,215 + Psest_0302 0.89 +0.2 322,216 - Psest_0302 0.89 +2.1 322,234 + Psest_0302 0.89 +0.0 322,249 + Psest_0302 0.89 -0.5 322,249 + Psest_0302 0.89 -0.8 322,249 + Psest_0302 0.89 -0.1 322,249 + Psest_0302 0.89 -0.3 322,249 + Psest_0302 0.89 +0.5 322,249 + Psest_0302 0.89 -0.1 322,250 - Psest_0302 0.89 -0.7 322,250 - Psest_0302 0.89 +1.1 322,252 + Psest_0302 0.89 +1.2 322,252 + Psest_0302 0.89 -0.5 322,253 - Psest_0302 0.89 +0.3 322,279 + Psest_0302 0.90 +0.8 322,295 - -1.5 322,567 - -1.3 322,841 + +0.1 322,841 + -0.0 322,842 - +0.1 322,842 - -0.6 322,842 - +0.1 322,893 + -1.7 322,942 + -0.1 322,942 + +0.1 322,942 + +0.1 322,943 - +0.2 322,943 - -0.2 322,943 - -0.1 322,943 - -1.0 323,029 + -0.5 323,029 + +1.9 323,029 + +0.2 323,029 + +0.5 323,029 + +0.9 323,029 + -2.0 323,029 + -0.8 323,029 + +0.3 323,029 + -0.3 323,029 + -1.8 323,029 + -2.9 323,030 - -1.0 323,030 - -0.3 323,030 - +0.5 323,030 - -2.5 323,030 - -2.0 323,030 - -0.1 323,030 - +0.3 323,030 - -2.8 323,030 - -0.0 323,030 - -1.0 323,030 - -0.2 323,030 - +0.0 323,030 - -0.5 323,031 + +0.5 323,031 + +0.5 323,418 + Psest_0303 0.39 +0.7 323,463 + Psest_0303 0.43 +0.8 323,552 + Psest_0303 0.52 -0.8 323,552 + Psest_0303 0.52 +3.2 323,552 + Psest_0303 0.52 +1.1 323,552 + Psest_0303 0.52 -0.0 323,552 + Psest_0303 0.52 +0.0 323,552 + Psest_0303 0.52 +0.5 323,552 + Psest_0303 0.52 +0.3 323,552 + Psest_0303 0.52 +0.2 323,751 - Psest_0303 0.71 +1.7 323,751 - Psest_0303 0.71 +0.2 323,751 - Psest_0303 0.71 -1.8 323,861 + Psest_0303 0.81 -0.5 323,861 + Psest_0303 0.81 -2.0 323,861 + Psest_0303 0.81 -0.5 323,861 + Psest_0303 0.81 -0.8 323,861 + Psest_0303 0.81 +0.1 323,862 - Psest_0303 0.81 -2.0 323,862 - Psest_0303 0.81 -0.5 323,862 - Psest_0303 0.81 +0.1 323,862 - Psest_0303 0.81 -2.8 323,862 - Psest_0303 0.81 -2.0 323,862 - Psest_0303 0.81 +0.0 323,862 - Psest_0303 0.81 +0.8 323,862 - Psest_0303 0.81 +0.8 323,862 - Psest_0303 0.81 +0.1 323,862 - Psest_0303 0.81 -2.0 323,960 + -0.0 323,960 + +1.5 323,960 + -0.8 323,960 + -0.5 323,961 - -0.7 323,961 - -1.0 323,961 - -3.0 323,961 - +0.5 323,961 - -0.3 324,049 + +0.5 324,050 - +0.2 325,053 + Psest_0305 0.70 -0.5 325,053 + Psest_0305 0.70 -1.0 325,053 + Psest_0305 0.70 +0.5 325,053 + Psest_0305 0.70 -1.9 325,054 - Psest_0305 0.70 -0.7 325,054 - Psest_0305 0.70 -0.9 325,054 - Psest_0305 0.70 +1.8 325,054 - Psest_0305 0.70 -1.3
Or see this region's nucleotide sequence