Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2115

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2114 and Psest_2115 are separated by 114 nucleotidesPsest_2115 and Psest_2116 are separated by 350 nucleotides Psest_2114: Psest_2114 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,243,575 to 2,244,534 _2114 Psest_2115: Psest_2115 - ATPase components of ABC transporters with duplicated ATPase domains, at 2,244,649 to 2,246,238 _2115 Psest_2116: Psest_2116 - TonB-dependent siderophore receptor, at 2,246,589 to 2,248,700 _2116 Position (kb) 2244 2245 2246 2247Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2243.803 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.031 kb on + strand, within Psest_2114at 2244.032 kb on - strand, within Psest_2114at 2244.032 kb on - strand, within Psest_2114at 2244.040 kb on + strand, within Psest_2114at 2244.040 kb on + strand, within Psest_2114at 2244.112 kb on + strand, within Psest_2114at 2244.112 kb on + strand, within Psest_2114at 2244.113 kb on - strand, within Psest_2114at 2244.113 kb on - strand, within Psest_2114at 2244.113 kb on - strand, within Psest_2114at 2244.207 kb on + strand, within Psest_2114at 2244.230 kb on - strand, within Psest_2114at 2244.391 kb on + strand, within Psest_2114at 2244.392 kb on - strand, within Psest_2114at 2244.678 kb on - strandat 2244.678 kb on - strandat 2244.686 kb on + strandat 2244.687 kb on - strandat 2245.079 kb on + strand, within Psest_2115at 2245.080 kb on - strand, within Psest_2115at 2245.520 kb on + strand, within Psest_2115at 2245.520 kb on + strand, within Psest_2115at 2245.520 kb on + strand, within Psest_2115at 2245.520 kb on + strand, within Psest_2115at 2245.520 kb on + strand, within Psest_2115at 2245.520 kb on + strand, within Psest_2115at 2245.520 kb on + strand, within Psest_2115at 2245.520 kb on + strand, within Psest_2115at 2245.521 kb on - strand, within Psest_2115at 2245.521 kb on - strand, within Psest_2115at 2245.521 kb on - strand, within Psest_2115at 2245.521 kb on - strand, within Psest_2115at 2245.521 kb on - strand, within Psest_2115at 2245.521 kb on - strand, within Psest_2115at 2245.529 kb on + strand, within Psest_2115at 2245.529 kb on + strand, within Psest_2115at 2245.530 kb on - strand, within Psest_2115at 2245.530 kb on - strand, within Psest_2115at 2245.809 kb on + strand, within Psest_2115at 2245.932 kb on - strand, within Psest_2115at 2246.244 kb on + strandat 2246.244 kb on + strandat 2246.244 kb on + strandat 2246.244 kb on + strandat 2246.248 kb on + strandat 2246.248 kb on + strandat 2246.248 kb on + strandat 2246.248 kb on + strandat 2246.249 kb on - strandat 2246.299 kb on + strandat 2246.436 kb on - strandat 2246.436 kb on - strandat 2246.440 kb on - strandat 2246.583 kb on + strandat 2246.583 kb on + strandat 2246.584 kb on - strandat 2246.664 kb on - strandat 2246.665 kb on + strandat 2246.797 kb on + strandat 2246.830 kb on + strand, within Psest_2116at 2246.922 kb on + strand, within Psest_2116at 2246.922 kb on + strand, within Psest_2116at 2246.923 kb on - strand, within Psest_2116at 2246.929 kb on - strand, within Psest_2116at 2246.961 kb on + strand, within Psest_2116at 2246.961 kb on + strand, within Psest_2116at 2246.961 kb on + strand, within Psest_2116at 2246.962 kb on - strand, within Psest_2116at 2246.962 kb on - strand, within Psest_2116at 2246.962 kb on - strand, within Psest_2116at 2247.092 kb on + strand, within Psest_2116at 2247.217 kb on - strand, within Psest_2116at 2247.217 kb on - strand, within Psest_2116

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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2,243,803 + Psest_2114 0.24 +0.8
2,244,031 + Psest_2114 0.47 +1.0
2,244,031 + Psest_2114 0.47 +1.3
2,244,031 + Psest_2114 0.47 +0.2
2,244,031 + Psest_2114 0.47 -0.8
2,244,031 + Psest_2114 0.47 -1.0
2,244,031 + Psest_2114 0.47 +0.2
2,244,031 + Psest_2114 0.47 +3.2
2,244,031 + Psest_2114 0.47 +0.6
2,244,031 + Psest_2114 0.47 +0.7
2,244,032 - Psest_2114 0.48 -0.2
2,244,032 - Psest_2114 0.48 +0.2
2,244,040 + Psest_2114 0.48 -1.4
2,244,040 + Psest_2114 0.48 -2.6
2,244,112 + Psest_2114 0.56 -1.4
2,244,112 + Psest_2114 0.56 -0.6
2,244,113 - Psest_2114 0.56 +0.8
2,244,113 - Psest_2114 0.56 +1.0
2,244,113 - Psest_2114 0.56 -0.2
2,244,207 + Psest_2114 0.66 -2.4
2,244,230 - Psest_2114 0.68 +1.2
2,244,391 + Psest_2114 0.85 +1.8
2,244,392 - Psest_2114 0.85 +1.2
2,244,678 - -3.0
2,244,678 - -1.6
2,244,686 + +0.4
2,244,687 - -0.2
2,245,079 + Psest_2115 0.27 +0.7
2,245,080 - Psest_2115 0.27 -0.2
2,245,520 + Psest_2115 0.55 +2.0
2,245,520 + Psest_2115 0.55 +0.5
2,245,520 + Psest_2115 0.55 -2.8
2,245,520 + Psest_2115 0.55 -1.4
2,245,520 + Psest_2115 0.55 -0.2
2,245,520 + Psest_2115 0.55 -1.4
2,245,520 + Psest_2115 0.55 +1.9
2,245,520 + Psest_2115 0.55 +1.2
2,245,521 - Psest_2115 0.55 -0.8
2,245,521 - Psest_2115 0.55 +0.6
2,245,521 - Psest_2115 0.55 +1.0
2,245,521 - Psest_2115 0.55 -0.1
2,245,521 - Psest_2115 0.55 +2.1
2,245,521 - Psest_2115 0.55 -1.4
2,245,529 + Psest_2115 0.55 +1.2
2,245,529 + Psest_2115 0.55 -0.1
2,245,530 - Psest_2115 0.55 -1.4
2,245,530 - Psest_2115 0.55 +0.2
2,245,809 + Psest_2115 0.73 +0.2
2,245,932 - Psest_2115 0.81 +0.4
2,246,244 + -1.2
2,246,244 + +0.3
2,246,244 + -1.2
2,246,244 + -1.0
2,246,248 + -0.7
2,246,248 + +0.1
2,246,248 + +1.5
2,246,248 + +0.2
2,246,249 - -1.3
2,246,299 + -0.2
2,246,436 - +2.8
2,246,436 - -1.8
2,246,440 - -1.4
2,246,583 + -0.7
2,246,583 + -2.2
2,246,584 - +1.9
2,246,664 - -2.2
2,246,665 + +1.0
2,246,797 + +0.6
2,246,830 + Psest_2116 0.11 -1.2
2,246,922 + Psest_2116 0.16 +0.4
2,246,922 + Psest_2116 0.16 -1.4
2,246,923 - Psest_2116 0.16 +1.2
2,246,929 - Psest_2116 0.16 +0.9
2,246,961 + Psest_2116 0.18 -0.6
2,246,961 + Psest_2116 0.18 +0.2
2,246,961 + Psest_2116 0.18 +0.8
2,246,962 - Psest_2116 0.18 -1.6
2,246,962 - Psest_2116 0.18 +1.2
2,246,962 - Psest_2116 0.18 -1.9
2,247,092 + Psest_2116 0.24 -1.4
2,247,217 - Psest_2116 0.30 -1.6
2,247,217 - Psest_2116 0.30 -1.4

Or see this region's nucleotide sequence