Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1729 and Psest_1730 are separated by 40 nucleotides Psest_1730 and Psest_1731 are separated by 1 nucleotides Psest_1731 and Psest_1732 overlap by 1 nucleotides
Psest_1729: Psest_1729 - flagellar motor switch protein FliM, at 1,835,251 to 1,836,222
_1729
Psest_1730: Psest_1730 - flagellar motor switch protein FliN, at 1,836,263 to 1,836,736
_1730
Psest_1731: Psest_1731 - flagellar biosynthetic protein FliO, at 1,836,738 to 1,837,157
_1731
Psest_1732: Psest_1732 - flagellar biosynthetic protein FliP, at 1,837,157 to 1,837,933
_1732
Position (kb) 1836
1837 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 1835.524 kb on + strand, within Psest_1729 at 1835.525 kb on - strand, within Psest_1729 at 1835.539 kb on + strand, within Psest_1729 at 1835.539 kb on + strand, within Psest_1729 at 1835.539 kb on + strand, within Psest_1729 at 1835.540 kb on - strand, within Psest_1729 at 1835.540 kb on - strand, within Psest_1729 at 1835.540 kb on - strand, within Psest_1729 at 1835.782 kb on + strand, within Psest_1729 at 1836.233 kb on + strand at 1836.234 kb on - strand at 1836.815 kb on + strand, within Psest_1731 at 1837.174 kb on - strand at 1837.269 kb on + strand, within Psest_1732 at 1837.276 kb on - strand, within Psest_1732 at 1837.280 kb on - strand, within Psest_1732 at 1837.280 kb on - strand, within Psest_1732 at 1837.539 kb on - strand, within Psest_1732 at 1837.539 kb on - strand, within Psest_1732 at 1837.661 kb on - strand, within Psest_1732 at 1837.661 kb on - strand, within Psest_1732 at 1837.661 kb on - strand, within Psest_1732
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 1,835,524 + Psest_1729 0.28 +5.3 1,835,525 - Psest_1729 0.28 +4.9 1,835,539 + Psest_1729 0.30 +2.6 1,835,539 + Psest_1729 0.30 +5.1 1,835,539 + Psest_1729 0.30 +5.4 1,835,540 - Psest_1729 0.30 +5.4 1,835,540 - Psest_1729 0.30 +3.4 1,835,540 - Psest_1729 0.30 +4.5 1,835,782 + Psest_1729 0.55 +5.6 1,836,233 + +1.6 1,836,234 - +3.6 1,836,815 + Psest_1731 0.18 +4.6 1,837,174 - +5.9 1,837,269 + Psest_1732 0.14 +4.4 1,837,276 - Psest_1732 0.15 +3.3 1,837,280 - Psest_1732 0.16 +0.7 1,837,280 - Psest_1732 0.16 +2.2 1,837,539 - Psest_1732 0.49 +5.9 1,837,539 - Psest_1732 0.49 +4.5 1,837,661 - Psest_1732 0.65 +5.0 1,837,661 - Psest_1732 0.65 +3.7 1,837,661 - Psest_1732 0.65 +4.4
Or see this region's nucleotide sequence