Experiment: No vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2364 and Psest_2365 are separated by 2 nucleotides Psest_2365 and Psest_2366 are separated by 3 nucleotides Psest_2366 and Psest_2367 are separated by 142 nucleotides
Psest_2364: Psest_2364 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,517,923 to 2,518,801
_2364
Psest_2365: Psest_2365 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,518,804 to 2,519,643
_2365
Psest_2366: Psest_2366 - Homoserine acetyltransferase, at 2,519,647 to 2,520,669
_2366
Psest_2367: Psest_2367 - glutamine synthetase, type III, at 2,520,812 to 2,522,176
_2367
Position (kb)
2519
2520
2521 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2518.685 kb on + strand, within Psest_2364 at 2518.685 kb on + strand, within Psest_2364 at 2518.685 kb on + strand, within Psest_2364 at 2518.685 kb on + strand, within Psest_2364 at 2518.685 kb on + strand, within Psest_2364 at 2518.685 kb on + strand, within Psest_2364 at 2518.686 kb on - strand, within Psest_2364 at 2518.686 kb on - strand, within Psest_2364 at 2518.686 kb on - strand, within Psest_2364 at 2519.431 kb on + strand, within Psest_2365 at 2519.432 kb on - strand, within Psest_2365 at 2519.432 kb on - strand, within Psest_2365 at 2519.432 kb on - strand, within Psest_2365 at 2519.432 kb on - strand, within Psest_2365 at 2519.432 kb on - strand, within Psest_2365 at 2519.660 kb on - strand at 2519.807 kb on + strand, within Psest_2366 at 2519.807 kb on + strand, within Psest_2366 at 2519.808 kb on - strand, within Psest_2366 at 2519.808 kb on - strand, within Psest_2366 at 2519.808 kb on - strand, within Psest_2366 at 2519.916 kb on + strand, within Psest_2366 at 2519.917 kb on - strand, within Psest_2366 at 2519.917 kb on - strand, within Psest_2366 at 2520.029 kb on + strand, within Psest_2366 at 2520.030 kb on - strand, within Psest_2366 at 2520.044 kb on + strand, within Psest_2366 at 2520.045 kb on - strand, within Psest_2366 at 2520.045 kb on - strand, within Psest_2366 at 2520.105 kb on - strand, within Psest_2366 at 2520.308 kb on + strand, within Psest_2366 at 2520.308 kb on + strand, within Psest_2366 at 2520.309 kb on - strand, within Psest_2366 at 2520.309 kb on - strand, within Psest_2366 at 2520.340 kb on + strand, within Psest_2366 at 2520.340 kb on + strand, within Psest_2366 at 2520.341 kb on - strand, within Psest_2366 at 2520.341 kb on - strand, within Psest_2366 at 2520.341 kb on - strand, within Psest_2366 at 2520.341 kb on - strand, within Psest_2366 at 2520.341 kb on - strand, within Psest_2366 at 2520.341 kb on - strand, within Psest_2366 at 2520.341 kb on - strand, within Psest_2366 at 2520.341 kb on - strand, within Psest_2366 at 2520.521 kb on + strand, within Psest_2366 at 2520.522 kb on - strand, within Psest_2366 at 2520.522 kb on - strand, within Psest_2366 at 2520.729 kb on + strand at 2520.730 kb on - strand at 2520.745 kb on + strand at 2520.745 kb on + strand at 2520.745 kb on + strand at 2520.745 kb on + strand at 2520.745 kb on + strand at 2520.745 kb on + strand at 2520.745 kb on + strand at 2520.745 kb on + strand at 2520.745 kb on + strand at 2520.746 kb on - strand at 2520.746 kb on - strand at 2520.746 kb on - strand at 2520.746 kb on - strand at 2520.746 kb on - strand at 2520.878 kb on + strand at 2520.879 kb on - strand at 2520.894 kb on - strand at 2520.894 kb on - strand at 2520.975 kb on - strand, within Psest_2367 at 2521.104 kb on - strand, within Psest_2367 at 2521.182 kb on - strand, within Psest_2367 at 2521.418 kb on + strand, within Psest_2367 at 2521.419 kb on - strand, within Psest_2367 at 2521.419 kb on - strand, within Psest_2367 at 2521.419 kb on - strand, within Psest_2367 at 2521.553 kb on + strand, within Psest_2367 at 2521.553 kb on + strand, within Psest_2367 at 2521.554 kb on - strand, within Psest_2367 at 2521.554 kb on - strand, within Psest_2367 at 2521.554 kb on - strand, within Psest_2367 at 2521.620 kb on - strand, within Psest_2367
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t1 remove 2,518,685 + Psest_2364 0.87 -2.2 2,518,685 + Psest_2364 0.87 -0.3 2,518,685 + Psest_2364 0.87 +0.3 2,518,685 + Psest_2364 0.87 -1.3 2,518,685 + Psest_2364 0.87 -1.2 2,518,685 + Psest_2364 0.87 +1.1 2,518,686 - Psest_2364 0.87 -0.7 2,518,686 - Psest_2364 0.87 +1.5 2,518,686 - Psest_2364 0.87 +0.5 2,519,431 + Psest_2365 0.75 +1.4 2,519,432 - Psest_2365 0.75 +1.5 2,519,432 - Psest_2365 0.75 -0.1 2,519,432 - Psest_2365 0.75 +0.5 2,519,432 - Psest_2365 0.75 +0.1 2,519,432 - Psest_2365 0.75 -1.7 2,519,660 - -0.9 2,519,807 + Psest_2366 0.16 +0.0 2,519,807 + Psest_2366 0.16 -0.9 2,519,808 - Psest_2366 0.16 -1.5 2,519,808 - Psest_2366 0.16 -1.5 2,519,808 - Psest_2366 0.16 -1.5 2,519,916 + Psest_2366 0.26 +0.6 2,519,917 - Psest_2366 0.26 +0.2 2,519,917 - Psest_2366 0.26 +0.1 2,520,029 + Psest_2366 0.37 -0.3 2,520,030 - Psest_2366 0.37 +2.1 2,520,044 + Psest_2366 0.39 +0.1 2,520,045 - Psest_2366 0.39 -3.6 2,520,045 - Psest_2366 0.39 -2.7 2,520,105 - Psest_2366 0.45 -0.5 2,520,308 + Psest_2366 0.65 -0.9 2,520,308 + Psest_2366 0.65 +0.5 2,520,309 - Psest_2366 0.65 -0.5 2,520,309 - Psest_2366 0.65 -1.9 2,520,340 + Psest_2366 0.68 -0.4 2,520,340 + Psest_2366 0.68 +0.7 2,520,341 - Psest_2366 0.68 -0.6 2,520,341 - Psest_2366 0.68 +1.0 2,520,341 - Psest_2366 0.68 -1.9 2,520,341 - Psest_2366 0.68 -3.3 2,520,341 - Psest_2366 0.68 -0.0 2,520,341 - Psest_2366 0.68 -0.0 2,520,341 - Psest_2366 0.68 -1.5 2,520,341 - Psest_2366 0.68 -0.7 2,520,521 + Psest_2366 0.85 -2.0 2,520,522 - Psest_2366 0.86 -2.7 2,520,522 - Psest_2366 0.86 -2.2 2,520,729 + -1.5 2,520,730 - +1.6 2,520,745 + +1.7 2,520,745 + -1.0 2,520,745 + +1.1 2,520,745 + -0.2 2,520,745 + +0.5 2,520,745 + +0.1 2,520,745 + -1.5 2,520,745 + -0.3 2,520,745 + +0.1 2,520,746 - +0.6 2,520,746 - +0.5 2,520,746 - -1.9 2,520,746 - +1.0 2,520,746 - -0.9 2,520,878 + +1.3 2,520,879 - +1.1 2,520,894 - +2.5 2,520,894 - -1.9 2,520,975 - Psest_2367 0.12 +2.9 2,521,104 - Psest_2367 0.21 -2.7 2,521,182 - Psest_2367 0.27 +0.1 2,521,418 + Psest_2367 0.44 +0.1 2,521,419 - Psest_2367 0.44 -0.9 2,521,419 - Psest_2367 0.44 -0.4 2,521,419 - Psest_2367 0.44 +0.9 2,521,553 + Psest_2367 0.54 +2.1 2,521,553 + Psest_2367 0.54 -0.9 2,521,554 - Psest_2367 0.54 -0.4 2,521,554 - Psest_2367 0.54 -0.9 2,521,554 - Psest_2367 0.54 +0.1 2,521,620 - Psest_2367 0.59 +0.9
Or see this region's nucleotide sequence