Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1455

Experiment: No vitamins t1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1453 and Psest_1454 are separated by 72 nucleotidesPsest_1454 and Psest_1455 are separated by 126 nucleotidesPsest_1455 and Psest_1456 are separated by 39 nucleotidesPsest_1456 and Psest_1457 are separated by 81 nucleotides Psest_1453: Psest_1453 - Glycerol-3-phosphate dehydrogenase, at 1,562,560 to 1,564,104 _1453 Psest_1454: Psest_1454 - ybaK/ebsC protein, at 1,564,177 to 1,564,647 _1454 Psest_1455: Psest_1455 - diguanylate cyclase (GGDEF) domain, at 1,564,774 to 1,565,862 _1455 Psest_1456: Psest_1456 - Protein of unknown function (DUF2892)., at 1,565,902 to 1,566,294 _1456 Psest_1457: Psest_1457 - FOG: Ankyrin repeat, at 1,566,376 to 1,566,900 _1457 Position (kb) 1564 1565 1566Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1563.793 kb on + strand, within Psest_1453at 1563.793 kb on + strand, within Psest_1453at 1563.793 kb on + strand, within Psest_1453at 1563.794 kb on - strand, within Psest_1453at 1563.794 kb on - strand, within Psest_1453at 1563.914 kb on + strand, within Psest_1453at 1563.939 kb on + strand, within Psest_1453at 1563.940 kb on - strand, within Psest_1453at 1563.940 kb on - strand, within Psest_1453at 1564.067 kb on + strandat 1564.067 kb on + strandat 1564.112 kb on + strandat 1564.113 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.115 kb on - strandat 1564.119 kb on - strandat 1564.119 kb on - strandat 1564.163 kb on - strandat 1564.168 kb on + strandat 1564.234 kb on + strand, within Psest_1454at 1564.235 kb on - strand, within Psest_1454at 1564.235 kb on - strand, within Psest_1454at 1564.235 kb on - strand, within Psest_1454at 1564.262 kb on - strand, within Psest_1454at 1564.262 kb on - strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.549 kb on + strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.550 kb on - strand, within Psest_1454at 1564.612 kb on - strandat 1564.612 kb on - strandat 1564.612 kb on - strandat 1564.646 kb on - strandat 1564.735 kb on + strandat 1565.184 kb on - strand, within Psest_1455at 1565.206 kb on + strand, within Psest_1455at 1565.208 kb on + strand, within Psest_1455at 1565.209 kb on - strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.227 kb on + strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.228 kb on - strand, within Psest_1455at 1565.249 kb on + strand, within Psest_1455at 1565.281 kb on + strand, within Psest_1455at 1565.337 kb on + strand, within Psest_1455at 1565.750 kb on + strand, within Psest_1455at 1565.750 kb on + strand, within Psest_1455at 1565.750 kb on + strand, within Psest_1455at 1565.751 kb on - strand, within Psest_1455at 1565.773 kb on + strandat 1565.774 kb on - strandat 1565.774 kb on - strandat 1565.983 kb on + strand, within Psest_1456at 1566.197 kb on + strand, within Psest_1456at 1566.197 kb on + strand, within Psest_1456at 1566.200 kb on + strand, within Psest_1456at 1566.200 kb on + strand, within Psest_1456at 1566.200 kb on + strand, within Psest_1456at 1566.201 kb on - strand, within Psest_1456at 1566.201 kb on - strand, within Psest_1456at 1566.201 kb on - strand, within Psest_1456at 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.341 kb on + strandat 1566.342 kb on - strandat 1566.342 kb on - strandat 1566.342 kb on - strandat 1566.342 kb on - strandat 1566.498 kb on - strand, within Psest_1457at 1566.722 kb on + strand, within Psest_1457at 1566.723 kb on - strand, within Psest_1457

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
remove
1,563,793 + Psest_1453 0.80 +0.2
1,563,793 + Psest_1453 0.80 -0.3
1,563,793 + Psest_1453 0.80 +1.3
1,563,794 - Psest_1453 0.80 +0.4
1,563,794 - Psest_1453 0.80 +1.6
1,563,914 + Psest_1453 0.88 +0.2
1,563,939 + Psest_1453 0.89 +0.2
1,563,940 - Psest_1453 0.89 -0.2
1,563,940 - Psest_1453 0.89 -0.5
1,564,067 + -1.1
1,564,067 + +1.5
1,564,112 + +1.2
1,564,113 - -2.1
1,564,115 - -0.5
1,564,115 - -0.4
1,564,115 - -0.4
1,564,115 - -1.0
1,564,115 - -0.5
1,564,115 - +1.2
1,564,115 - +2.2
1,564,115 - -0.5
1,564,115 - +1.2
1,564,119 - -1.4
1,564,119 - +1.5
1,564,163 - +0.2
1,564,168 + -0.6
1,564,234 + Psest_1454 0.12 +0.2
1,564,235 - Psest_1454 0.12 +0.9
1,564,235 - Psest_1454 0.12 -0.4
1,564,235 - Psest_1454 0.12 -0.9
1,564,262 - Psest_1454 0.18 -2.6
1,564,262 - Psest_1454 0.18 +0.2
1,564,549 + Psest_1454 0.79 +0.2
1,564,549 + Psest_1454 0.79 +2.5
1,564,549 + Psest_1454 0.79 +2.0
1,564,549 + Psest_1454 0.79 +0.7
1,564,549 + Psest_1454 0.79 +1.2
1,564,549 + Psest_1454 0.79 -1.0
1,564,549 + Psest_1454 0.79 -1.9
1,564,549 + Psest_1454 0.79 -0.8
1,564,549 + Psest_1454 0.79 +0.8
1,564,549 + Psest_1454 0.79 +0.2
1,564,549 + Psest_1454 0.79 +0.3
1,564,550 - Psest_1454 0.79 -0.8
1,564,550 - Psest_1454 0.79 -2.4
1,564,550 - Psest_1454 0.79 -1.2
1,564,550 - Psest_1454 0.79 -2.3
1,564,550 - Psest_1454 0.79 +1.5
1,564,550 - Psest_1454 0.79 +0.2
1,564,550 - Psest_1454 0.79 +2.5
1,564,550 - Psest_1454 0.79 -1.4
1,564,550 - Psest_1454 0.79 +0.9
1,564,612 - +0.2
1,564,612 - +0.2
1,564,612 - +0.6
1,564,646 - +0.5
1,564,735 + -0.5
1,565,184 - Psest_1455 0.38 -0.4
1,565,206 + Psest_1455 0.40 +0.2
1,565,208 + Psest_1455 0.40 -0.1
1,565,209 - Psest_1455 0.40 +1.9
1,565,227 + Psest_1455 0.42 +0.0
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 -0.4
1,565,227 + Psest_1455 0.42 -0.8
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 +1.2
1,565,227 + Psest_1455 0.42 -0.5
1,565,227 + Psest_1455 0.42 +0.2
1,565,227 + Psest_1455 0.42 -1.5
1,565,227 + Psest_1455 0.42 +1.9
1,565,227 + Psest_1455 0.42 +0.7
1,565,227 + Psest_1455 0.42 -2.4
1,565,227 + Psest_1455 0.42 -0.1
1,565,227 + Psest_1455 0.42 -0.3
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 +1.0
1,565,227 + Psest_1455 0.42 -0.5
1,565,227 + Psest_1455 0.42 +0.5
1,565,227 + Psest_1455 0.42 +0.2
1,565,227 + Psest_1455 0.42 +0.2
1,565,227 + Psest_1455 0.42 -0.8
1,565,227 + Psest_1455 0.42 +0.0
1,565,227 + Psest_1455 0.42 -0.5
1,565,227 + Psest_1455 0.42 +0.2
1,565,227 + Psest_1455 0.42 -1.1
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 +2.1
1,565,227 + Psest_1455 0.42 -0.5
1,565,227 + Psest_1455 0.42 +0.6
1,565,227 + Psest_1455 0.42 -2.4
1,565,227 + Psest_1455 0.42 +1.9
1,565,227 + Psest_1455 0.42 +0.2
1,565,227 + Psest_1455 0.42 -0.3
1,565,227 + Psest_1455 0.42 -1.4
1,565,227 + Psest_1455 0.42 +1.2
1,565,227 + Psest_1455 0.42 -0.1
1,565,227 + Psest_1455 0.42 +1.2
1,565,227 + Psest_1455 0.42 -0.3
1,565,227 + Psest_1455 0.42 +0.4
1,565,227 + Psest_1455 0.42 -0.6
1,565,227 + Psest_1455 0.42 +0.2
1,565,227 + Psest_1455 0.42 -1.6
1,565,227 + Psest_1455 0.42 +2.4
1,565,227 + Psest_1455 0.42 -0.5
1,565,228 - Psest_1455 0.42 -1.4
1,565,228 - Psest_1455 0.42 -0.5
1,565,228 - Psest_1455 0.42 -0.2
1,565,228 - Psest_1455 0.42 -1.4
1,565,228 - Psest_1455 0.42 -0.8
1,565,228 - Psest_1455 0.42 -0.7
1,565,228 - Psest_1455 0.42 +0.8
1,565,228 - Psest_1455 0.42 +0.4
1,565,228 - Psest_1455 0.42 -0.3
1,565,228 - Psest_1455 0.42 -1.1
1,565,228 - Psest_1455 0.42 -0.1
1,565,228 - Psest_1455 0.42 -1.0
1,565,228 - Psest_1455 0.42 +1.0
1,565,228 - Psest_1455 0.42 +0.9
1,565,228 - Psest_1455 0.42 -1.7
1,565,228 - Psest_1455 0.42 -0.2
1,565,228 - Psest_1455 0.42 +0.3
1,565,228 - Psest_1455 0.42 +1.4
1,565,228 - Psest_1455 0.42 -0.0
1,565,228 - Psest_1455 0.42 +0.7
1,565,228 - Psest_1455 0.42 -0.7
1,565,228 - Psest_1455 0.42 -0.3
1,565,228 - Psest_1455 0.42 -1.8
1,565,228 - Psest_1455 0.42 +0.2
1,565,228 - Psest_1455 0.42 +0.2
1,565,228 - Psest_1455 0.42 +2.2
1,565,228 - Psest_1455 0.42 -0.0
1,565,228 - Psest_1455 0.42 -1.0
1,565,228 - Psest_1455 0.42 -1.4
1,565,228 - Psest_1455 0.42 -1.0
1,565,228 - Psest_1455 0.42 +0.9
1,565,228 - Psest_1455 0.42 -0.5
1,565,228 - Psest_1455 0.42 -2.8
1,565,228 - Psest_1455 0.42 -0.8
1,565,228 - Psest_1455 0.42 +0.5
1,565,228 - Psest_1455 0.42 -0.2
1,565,249 + Psest_1455 0.44 +0.2
1,565,281 + Psest_1455 0.47 +0.2
1,565,337 + Psest_1455 0.52 +0.2
1,565,750 + Psest_1455 0.90 -1.2
1,565,750 + Psest_1455 0.90 +0.6
1,565,750 + Psest_1455 0.90 -2.4
1,565,751 - Psest_1455 0.90 +0.5
1,565,773 + +0.6
1,565,774 - +0.3
1,565,774 - -0.1
1,565,983 + Psest_1456 0.21 +0.4
1,566,197 + Psest_1456 0.75 -1.2
1,566,197 + Psest_1456 0.75 +0.6
1,566,200 + Psest_1456 0.76 +2.5
1,566,200 + Psest_1456 0.76 +0.2
1,566,200 + Psest_1456 0.76 +0.2
1,566,201 - Psest_1456 0.76 -0.8
1,566,201 - Psest_1456 0.76 -1.1
1,566,201 - Psest_1456 0.76 +0.2
1,566,341 + -1.6
1,566,341 + +0.1
1,566,341 + -0.1
1,566,341 + -0.8
1,566,341 + -2.1
1,566,341 + -1.8
1,566,341 + -1.4
1,566,342 - +3.0
1,566,342 - -0.4
1,566,342 - -1.6
1,566,342 - +0.4
1,566,498 - Psest_1457 0.23 -0.1
1,566,722 + Psest_1457 0.66 -0.5
1,566,723 - Psest_1457 0.66 +1.2

Or see this region's nucleotide sequence