Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1001

Experiment: With vitamins t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	With vitamins t2
1,086,111	+		Psest_1000	0.69	-0.7
1,086,112	-		Psest_1000	0.69	-0.7
1,086,112	-		Psest_1000	0.69	-0.5
1,086,189	+		Psest_1000	0.71	-4.1
1,086,189	+		Psest_1000	0.71	-0.7
1,086,190	-		Psest_1000	0.71	+0.3
1,086,190	-		Psest_1000	0.71	+0.3
1,086,190	-		Psest_1000	0.71	+1.3
1,086,258	+		Psest_1000	0.74	+0.3
1,086,258	+		Psest_1000	0.74	+0.3
1,086,258	+		Psest_1000	0.74	-1.7
1,086,258	+		Psest_1000	0.74	-1.3
1,086,258	+		Psest_1000	0.74	-0.7
1,086,259	-		Psest_1000	0.74	-2.0
1,086,259	-		Psest_1000	0.74	-1.5
1,086,259	-		Psest_1000	0.74	+0.3
1,086,259	-		Psest_1000	0.74	-3.1
1,086,259	-		Psest_1000	0.74	-0.0
1,086,259	-		Psest_1000	0.74	+0.8
1,086,259	-		Psest_1000	0.74	-1.3
1,086,259	-		Psest_1000	0.74	-1.3
1,086,259	-		Psest_1000	0.74	-3.7
1,086,259	-		Psest_1000	0.74	+0.3
1,086,259	-		Psest_1000	0.74	-2.5
1,086,334	+		Psest_1000	0.76	-1.3
1,086,335	-		Psest_1000	0.76	-1.5
1,086,409	-		Psest_1000	0.79	-0.8
1,086,409	-		Psest_1000	0.79	-1.5
1,086,409	-		Psest_1000	0.79	+0.3
1,086,409	-		Psest_1000	0.79	-0.4
1,086,556	-		Psest_1000	0.84	+0.3
1,086,738	+				-0.7
1,086,739	-				-1.1
1,086,766	-				-0.8
1,086,810	+				+0.3
1,086,811	-				-3.5
1,086,811	-				-2.5
1,086,811	-				-0.1
1,086,811	-				-2.5
1,086,811	-				+0.1
1,086,811	-				-1.3
1,086,841	-				-0.7
1,086,862	-				-2.3
1,086,882	+				-0.7
1,086,882	+				-2.0
1,086,883	-				-1.0
1,086,903	+				+0.3
1,086,904	-				-1.7
1,086,904	-				+0.0
1,086,904	-				-0.6
1,087,088	-		Psest_1001	0.40	-1.3
1,087,150	+		Psest_1001	0.75	-2.3
1,087,150	+		Psest_1001	0.75	+0.3
1,087,150	+		Psest_1001	0.75	-3.0
1,087,150	+		Psest_1001	0.75	-2.0
1,087,150	+		Psest_1001	0.75	+0.3
1,087,151	-		Psest_1001	0.76	-1.1
1,087,183	+				+0.4
1,087,184	-				-1.3
1,087,184	-				+0.9
1,087,187	+				-2.5
1,087,187	+				-3.6
1,087,187	+				-0.7
1,087,187	+				+0.3
1,087,187	+				-0.4
1,087,187	+				-2.0
1,087,187	+				-1.3
1,087,187	+				+1.3
1,087,188	-				-1.3
1,087,188	-				+0.9
1,087,188	-				-1.3
1,087,188	-				+0.1
1,087,188	-				-3.1
1,087,188	-				-0.7
1,087,188	-				-2.9
1,087,188	-				+0.9
1,087,188	-				+0.9
1,087,188	-				-2.5
1,087,188	-				-1.3
1,087,188	-				-1.3
1,087,188	-				+0.3
1,087,188	-				-0.7
1,087,188	-				-0.0
1,087,189	+				-0.9
1,087,189	+				-0.7
1,087,189	+				-2.3
1,087,189	+				+1.6
1,087,189	+				-1.7
1,087,189	+				-2.5
1,087,189	+				+0.9
1,087,189	+				-2.3
1,087,189	+				-0.4
1,087,189	+				+1.6
1,087,189	+				-0.7
1,087,189	+				-0.5
1,087,189	+				+1.3
1,087,189	+				-2.3
1,087,189	+				-0.7
1,087,189	+				-0.7
1,087,189	+				-2.7
1,087,189	+				-1.3
1,087,189	+				+1.6
1,087,189	+				-2.3
1,087,189	+				-2.6
1,087,189	+				-3.0
1,087,189	+				-2.5
1,087,189	+				-1.3
1,087,189	+				-0.4
1,087,189	+				-1.6
1,087,189	+				-3.1
1,087,189	+				-2.7
1,087,189	+				-1.7
1,087,189	+				-2.1
1,087,189	+				-0.3
1,087,189	+				-0.9
1,087,189	+				-2.0
1,087,189	+				+0.3
1,087,189	+				-0.7
1,087,189	+				-1.3
1,087,189	+				+0.5
1,087,189	+				-0.7
1,087,189	+				-0.3
1,087,189	+				-1.7
1,087,189	+				-0.9
1,087,189	+				+0.7
1,087,189	+				-1.7
1,087,189	+				-0.8
1,087,189	+				-1.7
1,087,189	+				+0.3
1,087,189	+				-2.0
1,087,189	+				-1.3
1,087,189	+				-2.1
1,087,189	+				+1.3
1,087,189	+				-1.3
1,087,189	+				-1.4
1,087,189	+				+0.3
1,087,189	+				-1.1
1,087,189	+				-1.4
1,087,189	+				-2.0
1,087,189	+				-1.0
1,087,189	+				+0.3
1,087,189	+				-1.7
1,087,189	+				-1.7
1,087,189	+				-1.0
1,087,189	+				-0.4
1,087,189	+				-1.7
1,087,189	+				-0.7
1,087,189	+				-1.7
1,087,189	+				-1.1
1,087,189	+				-3.7
1,087,189	+				-0.7
1,087,189	+				-2.7
1,087,189	+				-0.9
1,087,189	+				+0.3
1,087,189	+				+0.3
1,087,189	+				+0.3
1,087,189	+				+0.3
1,087,189	+				-1.0
1,087,190	-				-1.3
1,087,190	-				+2.0
1,087,190	-				+3.6
1,087,190	-				+0.7
1,087,190	-				+1.3
1,087,190	-				-3.3
1,087,190	-				-2.7
1,087,190	-				-0.4
1,087,190	-				-0.7
1,087,190	-				-1.0
1,087,190	-				+0.3
1,087,190	-				-0.3
1,087,190	-				+1.3
1,087,190	-				+2.5
1,087,190	-				-1.6
1,087,190	-				+1.1
1,087,190	-				-0.7
1,087,190	-				-1.7
1,087,190	-				-0.5
1,087,190	-				-0.7
1,087,190	-				+0.0
1,087,190	-				+4.0
1,087,190	-				-0.6
1,087,190	-				+0.4
1,087,190	-				+0.3
1,087,190	-				+1.3
1,087,190	-				+0.1
1,087,190	-				+1.6
1,087,190	-				-1.1
1,087,190	-				-0.5
1,087,190	-				+1.9
1,087,190	-				+0.2
1,087,190	-				-3.5
1,087,190	-				-0.5
1,087,190	-				+1.9
1,087,190	-				-0.7
1,087,190	-				-2.0
1,087,190	-				+0.3
1,087,190	-				-0.3
1,087,190	-				+0.1
1,087,190	-				-1.3
1,087,190	-				-0.1
1,087,190	-				-0.3
1,087,190	-				+0.3
1,087,190	-				-2.0
1,087,190	-				-0.3
1,087,190	-				+0.2
1,087,190	-				-1.5
1,087,190	-				+1.2
1,087,190	-				-0.7
1,087,190	-				+1.1
1,087,190	-				+2.1
1,087,190	-				-1.0
1,087,190	-				+0.3
1,087,190	-				-1.7
1,087,190	-				-2.0
1,087,190	-				-2.3
1,087,190	-				+2.2
1,087,190	-				+0.9
1,087,190	-				-0.7
1,087,190	-				-1.3
1,087,225	+				-2.7
1,087,492	+		Psest_1002	0.21	+0.3
1,087,582	+		Psest_1002	0.31	+0.3
1,087,582	+		Psest_1002	0.31	+0.3
1,087,771	+		Psest_1002	0.52	-0.7
1,087,886	+		Psest_1002	0.64	-2.7
1,087,886	+		Psest_1002	0.64	+0.7
1,087,886	+		Psest_1002	0.64	-0.0
1,087,887	-		Psest_1002	0.65	+1.3
1,087,887	-		Psest_1002	0.65	-2.0
1,087,887	-		Psest_1002	0.65	+2.6
1,087,894	+		Psest_1002	0.65	-0.7
1,087,894	+		Psest_1002	0.65	+0.6
1,087,895	-		Psest_1002	0.65	+0.3
1,087,895	-		Psest_1002	0.65	-0.9
1,087,895	-		Psest_1002	0.65	+1.6
1,087,990	+		Psest_1002	0.76	+0.6
1,087,991	-		Psest_1002	0.76	-3.0
1,087,991	-		Psest_1002	0.76	+1.4
1,088,101	+		Psest_1002	0.88	+3.8
1,088,102	-		Psest_1002	0.88	-0.1
1,088,102	-		Psest_1002	0.88	-2.0