Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1886

Experiment: With vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1884 and Psest_1885 are separated by 14 nucleotidesPsest_1885 and Psest_1886 are separated by 75 nucleotidesPsest_1886 and Psest_1887 are separated by 404 nucleotides Psest_1884: Psest_1884 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,994,332 to 1,995,009 _1884 Psest_1885: Psest_1885 - hypothetical protein, at 1,995,024 to 1,995,401 _1885 Psest_1886: Psest_1886 - Uncharacterized protein conserved in bacteria, at 1,995,477 to 1,995,776 _1886 Psest_1887: Psest_1887 - Predicted metal-dependent phosphoesterases (PHP family), at 1,996,181 to 1,997,047 _1887 Position (kb) 1995 1996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1994.682 kb on + strand, within Psest_1884at 1994.683 kb on - strand, within Psest_1884at 1994.714 kb on + strand, within Psest_1884at 1994.715 kb on - strand, within Psest_1884at 1994.998 kb on + strandat 1994.998 kb on + strandat 1994.998 kb on + strandat 1994.998 kb on + strandat 1994.998 kb on + strandat 1994.998 kb on + strandat 1994.999 kb on - strandat 1995.078 kb on - strand, within Psest_1885at 1995.210 kb on + strand, within Psest_1885at 1995.316 kb on + strand, within Psest_1885at 1995.317 kb on - strand, within Psest_1885at 1995.317 kb on - strand, within Psest_1885at 1995.346 kb on - strand, within Psest_1885at 1995.346 kb on - strand, within Psest_1885at 1995.412 kb on - strandat 1995.420 kb on - strandat 1995.459 kb on - strandat 1995.510 kb on + strand, within Psest_1886at 1995.511 kb on - strand, within Psest_1886at 1995.534 kb on + strand, within Psest_1886at 1995.535 kb on - strand, within Psest_1886at 1995.536 kb on + strand, within Psest_1886at 1995.537 kb on - strand, within Psest_1886at 1995.537 kb on - strand, within Psest_1886at 1995.537 kb on - strand, within Psest_1886at 1995.537 kb on - strand, within Psest_1886at 1995.538 kb on + strand, within Psest_1886at 1995.538 kb on + strand, within Psest_1886at 1995.538 kb on + strand, within Psest_1886at 1995.539 kb on - strand, within Psest_1886at 1995.539 kb on - strand, within Psest_1886at 1995.539 kb on - strand, within Psest_1886at 1995.769 kb on + strandat 1995.809 kb on - strandat 1995.824 kb on - strandat 1995.909 kb on - strandat 1996.108 kb on + strandat 1996.175 kb on + strandat 1996.178 kb on + strandat 1996.178 kb on + strandat 1996.178 kb on + strandat 1996.178 kb on + strandat 1996.178 kb on + strandat 1996.245 kb on + strandat 1996.381 kb on - strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t2
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1,994,682 + Psest_1884 0.52 -1.0
1,994,683 - Psest_1884 0.52 -0.4
1,994,714 + Psest_1884 0.56 -1.5
1,994,715 - Psest_1884 0.56 -2.0
1,994,998 + -1.4
1,994,998 + +0.6
1,994,998 + +0.6
1,994,998 + -1.2
1,994,998 + +0.0
1,994,998 + -1.3
1,994,999 - -0.6
1,995,078 - Psest_1885 0.14 -1.0
1,995,210 + Psest_1885 0.49 +2.0
1,995,316 + Psest_1885 0.77 -0.7
1,995,317 - Psest_1885 0.78 -0.5
1,995,317 - Psest_1885 0.78 +0.2
1,995,346 - Psest_1885 0.85 -0.3
1,995,346 - Psest_1885 0.85 +0.2
1,995,412 - -1.5
1,995,420 - +1.0
1,995,459 - -0.6
1,995,510 + Psest_1886 0.11 -1.0
1,995,511 - Psest_1886 0.11 -3.7
1,995,534 + Psest_1886 0.19 -0.5
1,995,535 - Psest_1886 0.19 -1.4
1,995,536 + Psest_1886 0.20 -1.0
1,995,537 - Psest_1886 0.20 -1.0
1,995,537 - Psest_1886 0.20 +2.0
1,995,537 - Psest_1886 0.20 -1.8
1,995,537 - Psest_1886 0.20 -0.4
1,995,538 + Psest_1886 0.20 -0.5
1,995,538 + Psest_1886 0.20 -1.0
1,995,538 + Psest_1886 0.20 -0.1
1,995,539 - Psest_1886 0.21 +0.6
1,995,539 - Psest_1886 0.21 -0.5
1,995,539 - Psest_1886 0.21 -1.5
1,995,769 + -0.7
1,995,809 - +2.0
1,995,824 - +1.2
1,995,909 - -2.1
1,996,108 + +1.5
1,996,175 + +2.6
1,996,178 + -1.8
1,996,178 + +0.4
1,996,178 + -1.0
1,996,178 + -0.5
1,996,178 + +0.0
1,996,245 + -1.0
1,996,381 - Psest_1887 0.23 +0.5
1,996,404 + Psest_1887 0.26 -2.1
1,996,404 + Psest_1887 0.26 -2.5
1,996,404 + Psest_1887 0.26 -1.5
1,996,404 + Psest_1887 0.26 -2.0
1,996,404 + Psest_1887 0.26 +0.1
1,996,404 + Psest_1887 0.26 -1.0
1,996,404 + Psest_1887 0.26 +0.4
1,996,405 - Psest_1887 0.26 +0.9
1,996,405 - Psest_1887 0.26 -1.1
1,996,405 - Psest_1887 0.26 -1.4
1,996,405 - Psest_1887 0.26 -2.3
1,996,405 - Psest_1887 0.26 +0.0
1,996,405 - Psest_1887 0.26 -2.3

Or see this region's nucleotide sequence