Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0492

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0491 and Psest_0492 are separated by 61 nucleotidesPsest_0492 and Psest_0493 are separated by 153 nucleotides Psest_0491: Psest_0491 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 543,500 to 545,566 _0491 Psest_0492: Psest_0492 - hypothetical protein, at 545,628 to 547,469 _0492 Psest_0493: Psest_0493 - phosphatidylserine decarboxylase precursor, at 547,623 to 548,522 _0493 Position (kb) 545 546 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 544.662 kb on + strand, within Psest_0491at 544.662 kb on + strand, within Psest_0491at 544.662 kb on + strand, within Psest_0491at 544.663 kb on - strand, within Psest_0491at 544.944 kb on + strand, within Psest_0491at 544.944 kb on + strand, within Psest_0491at 544.944 kb on + strand, within Psest_0491at 544.945 kb on - strand, within Psest_0491at 544.945 kb on - strand, within Psest_0491at 544.945 kb on - strand, within Psest_0491at 545.052 kb on + strand, within Psest_0491at 545.053 kb on - strand, within Psest_0491at 545.067 kb on + strand, within Psest_0491at 545.068 kb on - strand, within Psest_0491at 545.068 kb on - strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.077 kb on + strand, within Psest_0491at 545.091 kb on + strand, within Psest_0491at 545.092 kb on - strand, within Psest_0491at 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.629 kb on + strandat 545.629 kb on + strandat 545.630 kb on - strandat 545.630 kb on - strandat 545.630 kb on - strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.753 kb on - strandat 545.753 kb on - strandat 545.753 kb on - strandat 546.093 kb on + strand, within Psest_0492at 546.093 kb on + strand, within Psest_0492at 546.094 kb on - strand, within Psest_0492at 546.094 kb on - strand, within Psest_0492at 546.094 kb on - strand, within Psest_0492at 546.105 kb on + strand, within Psest_0492at 546.105 kb on + strand, within Psest_0492at 546.106 kb on - strand, within Psest_0492at 546.166 kb on + strand, within Psest_0492at 546.166 kb on + strand, within Psest_0492at 546.166 kb on + strand, within Psest_0492at 546.167 kb on - strand, within Psest_0492at 546.167 kb on - strand, within Psest_0492at 546.192 kb on - strand, within Psest_0492at 546.434 kb on - strand, within Psest_0492at 546.456 kb on - strand, within Psest_0492at 546.862 kb on + strand, within Psest_0492at 546.862 kb on + strand, within Psest_0492at 546.862 kb on + strand, within Psest_0492at 546.862 kb on + strand, within Psest_0492at 546.862 kb on + strand, within Psest_0492at 546.863 kb on - strand, within Psest_0492at 546.863 kb on - strand, within Psest_0492at 546.863 kb on - strand, within Psest_0492at 546.863 kb on - strand, within Psest_0492at 546.997 kb on + strand, within Psest_0492at 546.997 kb on + strand, within Psest_0492at 546.997 kb on + strand, within Psest_0492at 546.997 kb on + strand, within Psest_0492at 546.998 kb on - strand, within Psest_0492at 547.021 kb on - strand, within Psest_0492at 547.038 kb on + strand, within Psest_0492at 547.121 kb on - strand, within Psest_0492at 547.193 kb on + strand, within Psest_0492at 547.207 kb on + strand, within Psest_0492at 547.207 kb on + strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.208 kb on - strand, within Psest_0492at 547.294 kb on - strandat 547.322 kb on - strandat 547.322 kb on - strandat 547.463 kb on + strandat 547.500 kb on + strandat 547.500 kb on + strandat 547.500 kb on + strandat 547.500 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.504 kb on + strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.505 kb on - strandat 547.517 kb on + strandat 547.518 kb on - strandat 547.518 kb on - strandat 547.523 kb on + strandat 547.524 kb on - strandat 547.563 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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544,662 + Psest_0491 0.56 +1.4
544,662 + Psest_0491 0.56 +0.5
544,662 + Psest_0491 0.56 +0.5
544,663 - Psest_0491 0.56 +1.1
544,944 + Psest_0491 0.70 +0.8
544,944 + Psest_0491 0.70 -0.5
544,944 + Psest_0491 0.70 +1.7
544,945 - Psest_0491 0.70 +0.7
544,945 - Psest_0491 0.70 +2.1
544,945 - Psest_0491 0.70 +1.9
545,052 + Psest_0491 0.75 +1.5
545,053 - Psest_0491 0.75 +4.3
545,067 + Psest_0491 0.76 -0.1
545,068 - Psest_0491 0.76 -0.2
545,068 - Psest_0491 0.76 +0.8
545,071 + Psest_0491 0.76 +0.9
545,071 + Psest_0491 0.76 -1.4
545,071 + Psest_0491 0.76 +1.4
545,071 + Psest_0491 0.76 +1.0
545,071 + Psest_0491 0.76 +3.0
545,071 + Psest_0491 0.76 +2.1
545,071 + Psest_0491 0.76 +0.5
545,071 + Psest_0491 0.76 -0.7
545,071 + Psest_0491 0.76 -0.5
545,071 + Psest_0491 0.76 +0.2
545,071 + Psest_0491 0.76 -0.8
545,071 + Psest_0491 0.76 +1.6
545,071 + Psest_0491 0.76 +1.0
545,071 + Psest_0491 0.76 +0.7
545,071 + Psest_0491 0.76 +1.7
545,071 + Psest_0491 0.76 +0.9
545,071 + Psest_0491 0.76 -1.4
545,071 + Psest_0491 0.76 -0.2
545,071 + Psest_0491 0.76 -0.6
545,072 - Psest_0491 0.76 -2.8
545,072 - Psest_0491 0.76 +1.1
545,072 - Psest_0491 0.76 -1.2
545,072 - Psest_0491 0.76 +1.0
545,072 - Psest_0491 0.76 -2.3
545,072 - Psest_0491 0.76 +1.5
545,072 - Psest_0491 0.76 -0.3
545,072 - Psest_0491 0.76 -1.5
545,072 - Psest_0491 0.76 -0.7
545,072 - Psest_0491 0.76 +4.2
545,072 - Psest_0491 0.76 -0.5
545,072 - Psest_0491 0.76 +1.7
545,077 + Psest_0491 0.76 +0.2
545,091 + Psest_0491 0.77 -1.1
545,092 - Psest_0491 0.77 -0.5
545,577 + -2.3
545,577 + -1.8
545,577 + -2.1
545,577 + +0.7
545,577 + +2.9
545,577 + -0.0
545,577 + -0.5
545,577 + +0.3
545,577 + +1.8
545,577 + -0.8
545,577 + -0.8
545,578 - -0.6
545,578 - -0.6
545,578 - +0.8
545,578 - +0.1
545,578 - +0.5
545,578 - -1.4
545,578 - -0.2
545,578 - -0.5
545,629 + -0.5
545,629 + -1.4
545,630 - -1.1
545,630 - -2.5
545,630 - -0.2
545,752 + -0.5
545,752 + +0.5
545,752 + +0.3
545,752 + -0.1
545,752 + -0.8
545,752 + -0.7
545,752 + -1.1
545,753 - +2.1
545,753 - -0.3
545,753 - -0.1
546,093 + Psest_0492 0.25 -1.3
546,093 + Psest_0492 0.25 -1.4
546,094 - Psest_0492 0.25 +2.5
546,094 - Psest_0492 0.25 -1.3
546,094 - Psest_0492 0.25 -1.1
546,105 + Psest_0492 0.26 -2.0
546,105 + Psest_0492 0.26 -0.5
546,106 - Psest_0492 0.26 +1.0
546,166 + Psest_0492 0.29 -1.9
546,166 + Psest_0492 0.29 -1.7
546,166 + Psest_0492 0.29 +0.5
546,167 - Psest_0492 0.29 -1.0
546,167 - Psest_0492 0.29 +0.5
546,192 - Psest_0492 0.31 +0.1
546,434 - Psest_0492 0.44 -1.1
546,456 - Psest_0492 0.45 -0.9
546,862 + Psest_0492 0.67 -2.2
546,862 + Psest_0492 0.67 +1.1
546,862 + Psest_0492 0.67 +0.5
546,862 + Psest_0492 0.67 +0.5
546,862 + Psest_0492 0.67 -1.1
546,863 - Psest_0492 0.67 -0.5
546,863 - Psest_0492 0.67 +0.5
546,863 - Psest_0492 0.67 -0.9
546,863 - Psest_0492 0.67 -2.1
546,997 + Psest_0492 0.74 +2.1
546,997 + Psest_0492 0.74 -2.7
546,997 + Psest_0492 0.74 +0.5
546,997 + Psest_0492 0.74 +2.1
546,998 - Psest_0492 0.74 -0.8
547,021 - Psest_0492 0.76 -0.9
547,038 + Psest_0492 0.77 -2.7
547,121 - Psest_0492 0.81 +0.7
547,193 + Psest_0492 0.85 -1.3
547,207 + Psest_0492 0.86 +1.0
547,207 + Psest_0492 0.86 +1.5
547,208 - Psest_0492 0.86 +1.0
547,208 - Psest_0492 0.86 -0.5
547,208 - Psest_0492 0.86 +0.3
547,208 - Psest_0492 0.86 +0.1
547,208 - Psest_0492 0.86 -1.1
547,294 - -2.3
547,322 - +0.4
547,322 - -0.5
547,463 + +0.5
547,500 + +0.5
547,500 + +0.2
547,500 + -0.3
547,500 + +0.3
547,504 + +0.5
547,504 + -0.7
547,504 + +0.1
547,504 + -0.1
547,505 - -1.1
547,505 - -1.5
547,505 - +0.7
547,505 - +1.6
547,505 - -0.5
547,517 + -1.5
547,518 - -1.2
547,518 - +2.6
547,523 + -1.1
547,524 - -2.1
547,563 + +2.0

Or see this region's nucleotide sequence