Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4069

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4068 and Psest_4069 are separated by 103 nucleotidesPsest_4069 and Psest_4070 are separated by 158 nucleotides Psest_4068: Psest_4068 - phosphoribosylaminoimidazole carboxylase, PurK protein, at 4,238,392 to 4,239,477 _4068 Psest_4069: Psest_4069 - phosphoribosylaminoimidazole carboxylase, PurE protein, at 4,239,581 to 4,240,069 _4069 Psest_4070: Psest_4070 - PAS domain S-box, at 4,240,228 to 4,242,720 _4070 Position (kb) 4239 4240 4241Strain fitness (log2 ratio) -2 -1 0 1at 4239.540 kb on + strandat 4239.540 kb on + strandat 4239.540 kb on + strandat 4239.540 kb on + strandat 4239.541 kb on + strandat 4239.541 kb on - strandat 4239.541 kb on - strandat 4239.541 kb on - strandat 4239.541 kb on - strandat 4239.542 kb on + strandat 4239.542 kb on + strandat 4240.185 kb on - strandat 4240.185 kb on - strandat 4240.185 kb on - strandat 4240.187 kb on - strandat 4240.523 kb on + strand, within Psest_4070at 4240.523 kb on + strand, within Psest_4070at 4240.523 kb on + strand, within Psest_4070at 4240.524 kb on - strand, within Psest_4070at 4240.524 kb on - strand, within Psest_4070at 4240.800 kb on - strand, within Psest_4070

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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4,239,540 + -2.3
4,239,540 + -1.0
4,239,540 + -1.8
4,239,540 + -1.0
4,239,541 + -1.0
4,239,541 - -0.4
4,239,541 - -1.0
4,239,541 - +1.6
4,239,541 - -1.2
4,239,542 + +0.8
4,239,542 + -0.4
4,240,185 - +0.2
4,240,185 - +1.2
4,240,185 - +0.2
4,240,187 - -0.6
4,240,523 + Psest_4070 0.12 +0.6
4,240,523 + Psest_4070 0.12 +0.2
4,240,523 + Psest_4070 0.12 -2.0
4,240,524 - Psest_4070 0.12 +0.6
4,240,524 - Psest_4070 0.12 +0.8
4,240,800 - Psest_4070 0.23 -0.4

Or see this region's nucleotide sequence