Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3197

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3196 and Psest_3197 are separated by 286 nucleotidesPsest_3197 and Psest_3198 are separated by 189 nucleotidesPsest_3198 and Psest_3199 are separated by 0 nucleotides Psest_3196: Psest_3196 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 3,367,824 to 3,368,981 _3196 Psest_3197: Psest_3197 - hypothetical protein, at 3,369,268 to 3,370,164 _3197 Psest_3198: Psest_3198 - Putative hemolysin, at 3,370,354 to 3,371,100 _3198 Psest_3199: Psest_3199 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,371,101 to 3,371,874 _3199 Position (kb) 3369 3370 3371Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3368.281 kb on + strand, within Psest_3196at 3368.281 kb on + strand, within Psest_3196at 3368.282 kb on - strand, within Psest_3196at 3368.413 kb on - strand, within Psest_3196at 3368.602 kb on + strand, within Psest_3196at 3368.602 kb on + strand, within Psest_3196at 3368.603 kb on - strand, within Psest_3196at 3368.619 kb on + strand, within Psest_3196at 3368.619 kb on + strand, within Psest_3196at 3368.620 kb on - strand, within Psest_3196at 3368.620 kb on - strand, within Psest_3196at 3368.620 kb on - strand, within Psest_3196at 3368.620 kb on - strand, within Psest_3196at 3368.620 kb on - strand, within Psest_3196at 3368.620 kb on - strand, within Psest_3196at 3368.686 kb on + strand, within Psest_3196at 3368.686 kb on + strand, within Psest_3196at 3368.687 kb on - strand, within Psest_3196at 3368.852 kb on - strand, within Psest_3196at 3368.852 kb on - strand, within Psest_3196at 3368.852 kb on - strand, within Psest_3196at 3368.852 kb on - strand, within Psest_3196at 3368.852 kb on - strand, within Psest_3196at 3368.992 kb on + strandat 3368.993 kb on - strandat 3369.137 kb on + strandat 3369.218 kb on + strandat 3369.218 kb on + strandat 3369.219 kb on - strandat 3369.219 kb on - strandat 3369.219 kb on - strandat 3369.219 kb on - strandat 3369.220 kb on + strandat 3369.220 kb on + strandat 3369.220 kb on + strandat 3369.220 kb on + strandat 3369.220 kb on + strandat 3369.220 kb on + strandat 3369.220 kb on + strandat 3369.221 kb on - strandat 3369.523 kb on + strand, within Psest_3197at 3369.524 kb on - strand, within Psest_3197at 3369.595 kb on + strand, within Psest_3197at 3369.614 kb on + strand, within Psest_3197at 3369.615 kb on - strand, within Psest_3197at 3369.615 kb on - strand, within Psest_3197at 3369.615 kb on - strand, within Psest_3197at 3369.635 kb on + strand, within Psest_3197at 3369.936 kb on + strand, within Psest_3197at 3369.995 kb on + strand, within Psest_3197at 3370.044 kb on - strand, within Psest_3197at 3370.088 kb on - strandat 3370.088 kb on - strandat 3370.088 kb on - strandat 3370.544 kb on + strand, within Psest_3198at 3370.544 kb on + strand, within Psest_3198at 3370.544 kb on + strand, within Psest_3198at 3370.544 kb on + strand, within Psest_3198at 3370.544 kb on + strand, within Psest_3198at 3370.545 kb on - strand, within Psest_3198at 3370.545 kb on - strand, within Psest_3198at 3370.545 kb on - strand, within Psest_3198at 3370.625 kb on - strand, within Psest_3198at 3370.625 kb on - strand, within Psest_3198at 3370.873 kb on - strand, within Psest_3198at 3370.966 kb on + strand, within Psest_3198at 3370.966 kb on + strand, within Psest_3198at 3370.966 kb on + strand, within Psest_3198at 3370.966 kb on + strand, within Psest_3198at 3370.966 kb on + strand, within Psest_3198at 3370.966 kb on + strand, within Psest_3198at 3370.966 kb on + strand, within Psest_3198at 3370.967 kb on - strand, within Psest_3198at 3370.967 kb on - strand, within Psest_3198at 3370.967 kb on - strand, within Psest_3198at 3370.967 kb on - strand, within Psest_3198at 3370.967 kb on - strand, within Psest_3198at 3370.967 kb on - strand, within Psest_3198at 3370.967 kb on - strand, within Psest_3198at 3370.967 kb on - strand, within Psest_3198at 3370.967 kb on - strand, within Psest_3198at 3370.969 kb on - strand, within Psest_3198at 3371.098 kb on + strandat 3371.098 kb on + strandat 3371.098 kb on + strandat 3371.098 kb on + strandat 3371.098 kb on + strandat 3371.098 kb on + strandat 3371.098 kb on + strandat 3371.162 kb on + strandat 3371.162 kb on + strandat 3371.163 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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3,368,281 + Psest_3196 0.39 -0.4
3,368,281 + Psest_3196 0.39 -0.6
3,368,282 - Psest_3196 0.40 -0.7
3,368,413 - Psest_3196 0.51 -3.1
3,368,602 + Psest_3196 0.67 -1.9
3,368,602 + Psest_3196 0.67 +0.1
3,368,603 - Psest_3196 0.67 -1.9
3,368,619 + Psest_3196 0.69 +0.8
3,368,619 + Psest_3196 0.69 +2.0
3,368,620 - Psest_3196 0.69 -0.0
3,368,620 - Psest_3196 0.69 -0.6
3,368,620 - Psest_3196 0.69 -0.6
3,368,620 - Psest_3196 0.69 -3.6
3,368,620 - Psest_3196 0.69 +1.1
3,368,620 - Psest_3196 0.69 +1.4
3,368,686 + Psest_3196 0.74 +1.9
3,368,686 + Psest_3196 0.74 -1.1
3,368,687 - Psest_3196 0.75 -0.6
3,368,852 - Psest_3196 0.89 -1.3
3,368,852 - Psest_3196 0.89 -1.9
3,368,852 - Psest_3196 0.89 -0.5
3,368,852 - Psest_3196 0.89 -0.6
3,368,852 - Psest_3196 0.89 +0.4
3,368,992 + +1.0
3,368,993 - +1.4
3,369,137 + -2.6
3,369,218 + +1.3
3,369,218 + -0.2
3,369,219 - +0.8
3,369,219 - -0.4
3,369,219 - +0.3
3,369,219 - +1.6
3,369,220 + +0.3
3,369,220 + +1.3
3,369,220 + -0.2
3,369,220 + +0.3
3,369,220 + -2.4
3,369,220 + -0.2
3,369,220 + +0.8
3,369,221 - +1.0
3,369,523 + Psest_3197 0.28 -1.6
3,369,524 - Psest_3197 0.29 +0.4
3,369,595 + Psest_3197 0.36 -1.2
3,369,614 + Psest_3197 0.39 -0.8
3,369,615 - Psest_3197 0.39 -2.6
3,369,615 - Psest_3197 0.39 +0.4
3,369,615 - Psest_3197 0.39 -2.8
3,369,635 + Psest_3197 0.41 -0.5
3,369,936 + Psest_3197 0.74 -1.3
3,369,995 + Psest_3197 0.81 -0.6
3,370,044 - Psest_3197 0.87 -0.6
3,370,088 - +0.9
3,370,088 - -0.6
3,370,088 - -0.9
3,370,544 + Psest_3198 0.25 +1.8
3,370,544 + Psest_3198 0.25 +0.5
3,370,544 + Psest_3198 0.25 +0.3
3,370,544 + Psest_3198 0.25 -0.2
3,370,544 + Psest_3198 0.25 +3.0
3,370,545 - Psest_3198 0.26 -0.6
3,370,545 - Psest_3198 0.26 +2.4
3,370,545 - Psest_3198 0.26 -0.8
3,370,625 - Psest_3198 0.36 -0.3
3,370,625 - Psest_3198 0.36 -1.2
3,370,873 - Psest_3198 0.69 +0.1
3,370,966 + Psest_3198 0.82 +0.8
3,370,966 + Psest_3198 0.82 -2.1
3,370,966 + Psest_3198 0.82 -1.2
3,370,966 + Psest_3198 0.82 +1.1
3,370,966 + Psest_3198 0.82 +0.4
3,370,966 + Psest_3198 0.82 +0.4
3,370,966 + Psest_3198 0.82 +1.5
3,370,967 - Psest_3198 0.82 -0.9
3,370,967 - Psest_3198 0.82 +0.4
3,370,967 - Psest_3198 0.82 +0.8
3,370,967 - Psest_3198 0.82 -1.2
3,370,967 - Psest_3198 0.82 +2.5
3,370,967 - Psest_3198 0.82 -1.4
3,370,967 - Psest_3198 0.82 -1.6
3,370,967 - Psest_3198 0.82 +3.4
3,370,967 - Psest_3198 0.82 +0.0
3,370,969 - Psest_3198 0.82 -0.9
3,371,098 + -1.0
3,371,098 + +0.9
3,371,098 + +0.6
3,371,098 + +0.1
3,371,098 + +0.4
3,371,098 + -0.2
3,371,098 + -0.9
3,371,162 + -1.9
3,371,162 + -1.6
3,371,163 - -0.2

Or see this region's nucleotide sequence