Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2965

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2963 and Psest_2964 are separated by 35 nucleotidesPsest_2964 and Psest_2965 are separated by 195 nucleotidesPsest_2965 and Psest_2966 are separated by 30 nucleotidesPsest_2966 and Psest_2967 are separated by 19 nucleotides Psest_2963: Psest_2963 - flagellar basal-body rod protein FlgG, Gram-negative bacteria, at 3,159,322 to 3,160,107 _2963 Psest_2964: Psest_2964 - flagellar basal-body rod protein FlgF, at 3,160,143 to 3,160,883 _2964 Psest_2965: Psest_2965 - fagellar hook-basal body proteins, at 3,161,079 to 3,162,665 _2965 Psest_2966: Psest_2966 - Flagellar hook capping protein, at 3,162,696 to 3,163,379 _2966 Psest_2967: Psest_2967 - flagellar basal-body rod protein FlgC, at 3,163,399 to 3,163,842 _2967 Position (kb) 3161 3162 3163Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 3160.145 kb on - strandat 3160.145 kb on - strandat 3160.206 kb on + strandat 3160.207 kb on - strandat 3160.207 kb on - strandat 3160.207 kb on - strandat 3160.207 kb on - strandat 3160.302 kb on + strand, within Psest_2964at 3160.303 kb on - strand, within Psest_2964at 3160.565 kb on + strand, within Psest_2964at 3160.588 kb on + strand, within Psest_2964at 3160.589 kb on - strand, within Psest_2964at 3160.589 kb on - strand, within Psest_2964at 3160.589 kb on - strand, within Psest_2964at 3160.640 kb on + strand, within Psest_2964at 3160.717 kb on + strand, within Psest_2964at 3160.717 kb on + strand, within Psest_2964at 3160.717 kb on + strand, within Psest_2964at 3160.718 kb on - strand, within Psest_2964at 3160.798 kb on - strand, within Psest_2964at 3160.798 kb on - strand, within Psest_2964at 3160.798 kb on - strand, within Psest_2964at 3160.867 kb on + strandat 3160.867 kb on + strandat 3160.867 kb on + strandat 3160.867 kb on + strandat 3160.867 kb on + strandat 3160.868 kb on - strandat 3160.868 kb on - strandat 3160.868 kb on - strandat 3160.868 kb on - strandat 3160.868 kb on - strandat 3160.868 kb on - strandat 3161.000 kb on - strandat 3161.077 kb on + strandat 3161.080 kb on + strandat 3161.091 kb on + strandat 3161.091 kb on + strandat 3161.091 kb on + strandat 3161.092 kb on - strandat 3161.092 kb on - strandat 3161.092 kb on - strandat 3161.092 kb on - strandat 3161.146 kb on + strandat 3161.146 kb on + strandat 3161.151 kb on - strandat 3161.151 kb on - strandat 3161.440 kb on + strand, within Psest_2965at 3161.440 kb on + strand, within Psest_2965at 3161.440 kb on + strand, within Psest_2965at 3161.441 kb on - strand, within Psest_2965at 3161.441 kb on - strand, within Psest_2965at 3161.483 kb on - strand, within Psest_2965at 3161.628 kb on - strand, within Psest_2965at 3161.673 kb on - strand, within Psest_2965at 3161.722 kb on + strand, within Psest_2965at 3161.722 kb on + strand, within Psest_2965at 3161.722 kb on + strand, within Psest_2965at 3161.723 kb on - strand, within Psest_2965at 3161.723 kb on - strand, within Psest_2965at 3161.723 kb on - strand, within Psest_2965at 3161.776 kb on - strand, within Psest_2965at 3161.776 kb on - strand, within Psest_2965at 3161.792 kb on + strand, within Psest_2965at 3161.792 kb on + strand, within Psest_2965at 3161.792 kb on + strand, within Psest_2965at 3161.792 kb on + strand, within Psest_2965at 3161.792 kb on + strand, within Psest_2965at 3161.792 kb on + strand, within Psest_2965at 3161.793 kb on - strand, within Psest_2965at 3161.793 kb on - strand, within Psest_2965at 3161.793 kb on - strand, within Psest_2965at 3161.793 kb on - strand, within Psest_2965at 3161.793 kb on - strand, within Psest_2965at 3161.793 kb on - strand, within Psest_2965at 3161.793 kb on - strand, within Psest_2965at 3161.815 kb on + strand, within Psest_2965at 3161.815 kb on + strand, within Psest_2965at 3161.815 kb on + strand, within Psest_2965at 3161.816 kb on - strand, within Psest_2965at 3161.837 kb on + strand, within Psest_2965at 3161.838 kb on - strand, within Psest_2965at 3161.838 kb on - strand, within Psest_2965at 3161.851 kb on + strand, within Psest_2965at 3161.851 kb on + strand, within Psest_2965at 3161.851 kb on + strand, within Psest_2965at 3161.851 kb on + strand, within Psest_2965at 3161.851 kb on + strand, within Psest_2965at 3161.851 kb on + strand, within Psest_2965at 3161.852 kb on - strand, within Psest_2965at 3161.852 kb on - strand, within Psest_2965at 3161.852 kb on - strand, within Psest_2965at 3161.852 kb on - strand, within Psest_2965at 3161.852 kb on - strand, within Psest_2965at 3161.852 kb on - strand, within Psest_2965at 3161.852 kb on - strand, within Psest_2965at 3161.852 kb on - strand, within Psest_2965at 3161.879 kb on - strand, within Psest_2965at 3161.879 kb on - strand, within Psest_2965at 3161.901 kb on - strand, within Psest_2965at 3161.988 kb on - strand, within Psest_2965at 3162.067 kb on + strand, within Psest_2965at 3162.086 kb on + strand, within Psest_2965at 3162.087 kb on - strand, within Psest_2965at 3162.087 kb on - strand, within Psest_2965at 3162.087 kb on - strand, within Psest_2965at 3162.089 kb on + strand, within Psest_2965at 3162.089 kb on + strand, within Psest_2965at 3162.090 kb on - strand, within Psest_2965at 3162.101 kb on + strand, within Psest_2965at 3162.102 kb on - strand, within Psest_2965at 3162.103 kb on + strand, within Psest_2965at 3162.103 kb on + strand, within Psest_2965at 3162.104 kb on - strand, within Psest_2965at 3162.104 kb on - strand, within Psest_2965at 3162.104 kb on - strand, within Psest_2965at 3162.115 kb on + strand, within Psest_2965at 3162.116 kb on - strand, within Psest_2965at 3162.227 kb on + strand, within Psest_2965at 3162.228 kb on - strand, within Psest_2965at 3162.228 kb on - strand, within Psest_2965at 3162.228 kb on - strand, within Psest_2965at 3162.231 kb on - strand, within Psest_2965at 3162.231 kb on - strand, within Psest_2965at 3162.231 kb on - strand, within Psest_2965at 3162.231 kb on - strand, within Psest_2965at 3162.255 kb on + strand, within Psest_2965at 3162.305 kb on + strand, within Psest_2965at 3162.305 kb on + strand, within Psest_2965at 3162.306 kb on - strand, within Psest_2965at 3162.306 kb on - strand, within Psest_2965at 3162.306 kb on - strand, within Psest_2965at 3162.306 kb on - strand, within Psest_2965at 3162.306 kb on - strand, within Psest_2965at 3162.353 kb on - strand, within Psest_2965at 3162.367 kb on + strand, within Psest_2965at 3162.367 kb on + strand, within Psest_2965at 3162.367 kb on + strand, within Psest_2965at 3162.368 kb on - strand, within Psest_2965at 3162.368 kb on - strand, within Psest_2965at 3162.368 kb on - strand, within Psest_2965at 3162.373 kb on - strand, within Psest_2965at 3162.442 kb on + strand, within Psest_2965at 3162.442 kb on + strand, within Psest_2965at 3162.442 kb on + strand, within Psest_2965at 3162.443 kb on - strand, within Psest_2965at 3162.449 kb on + strand, within Psest_2965at 3162.449 kb on + strand, within Psest_2965at 3162.449 kb on + strand, within Psest_2965at 3162.476 kb on + strand, within Psest_2965at 3162.476 kb on + strand, within Psest_2965at 3162.817 kb on + strand, within Psest_2966at 3162.817 kb on + strand, within Psest_2966at 3162.817 kb on + strand, within Psest_2966at 3162.817 kb on + strand, within Psest_2966at 3162.817 kb on + strand, within Psest_2966at 3162.818 kb on - strand, within Psest_2966at 3162.818 kb on - strand, within Psest_2966at 3162.818 kb on - strand, within Psest_2966at 3162.818 kb on - strand, within Psest_2966at 3162.818 kb on - strand, within Psest_2966at 3162.841 kb on + strand, within Psest_2966at 3162.841 kb on + strand, within Psest_2966at 3162.842 kb on - strand, within Psest_2966at 3162.842 kb on - strand, within Psest_2966at 3162.845 kb on + strand, within Psest_2966at 3162.982 kb on + strand, within Psest_2966at 3162.982 kb on + strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3162.983 kb on - strand, within Psest_2966at 3163.185 kb on - strand, within Psest_2966at 3163.185 kb on - strand, within Psest_2966at 3163.233 kb on + strand, within Psest_2966at 3163.331 kb on - strandat 3163.379 kb on + strandat 3163.379 kb on + strandat 3163.379 kb on + strandat 3163.379 kb on + strandat 3163.380 kb on - strandat 3163.380 kb on - strandat 3163.380 kb on - strandat 3163.397 kb on + strandat 3163.397 kb on + strandat 3163.397 kb on + strandat 3163.398 kb on - strandat 3163.398 kb on - strandat 3163.398 kb on - strandat 3163.398 kb on - strandat 3163.526 kb on + strand, within Psest_2967at 3163.529 kb on + strand, within Psest_2967at 3163.529 kb on + strand, within Psest_2967at 3163.613 kb on - strand, within Psest_2967at 3163.613 kb on - strand, within Psest_2967

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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3,160,145 - -0.3
3,160,145 - -1.2
3,160,206 + +4.8
3,160,207 - +1.3
3,160,207 - +0.9
3,160,207 - -0.7
3,160,207 - +0.3
3,160,302 + Psest_2964 0.21 +1.3
3,160,303 - Psest_2964 0.22 -2.0
3,160,565 + Psest_2964 0.57 +5.0
3,160,588 + Psest_2964 0.60 +7.7
3,160,589 - Psest_2964 0.60 +6.4
3,160,589 - Psest_2964 0.60 +2.7
3,160,589 - Psest_2964 0.60 +3.4
3,160,640 + Psest_2964 0.67 +3.5
3,160,717 + Psest_2964 0.77 +4.2
3,160,717 + Psest_2964 0.77 +3.7
3,160,717 + Psest_2964 0.77 +3.9
3,160,718 - Psest_2964 0.78 +0.8
3,160,798 - Psest_2964 0.88 +3.1
3,160,798 - Psest_2964 0.88 +1.2
3,160,798 - Psest_2964 0.88 +3.8
3,160,867 + +5.9
3,160,867 + +4.5
3,160,867 + +3.7
3,160,867 + +4.9
3,160,867 + +0.8
3,160,868 - +2.1
3,160,868 - +1.5
3,160,868 - +3.9
3,160,868 - +3.4
3,160,868 - +5.1
3,160,868 - +4.9
3,161,000 - -0.7
3,161,077 + -0.2
3,161,080 + -1.4
3,161,091 + +3.8
3,161,091 + +4.5
3,161,091 + +4.0
3,161,092 - +3.8
3,161,092 - +3.5
3,161,092 - +3.4
3,161,092 - +2.8
3,161,146 + +2.9
3,161,146 + +2.2
3,161,151 - +4.5
3,161,151 - +3.4
3,161,440 + Psest_2965 0.23 +6.0
3,161,440 + Psest_2965 0.23 +2.1
3,161,440 + Psest_2965 0.23 +6.4
3,161,441 - Psest_2965 0.23 +4.7
3,161,441 - Psest_2965 0.23 +0.8
3,161,483 - Psest_2965 0.25 +2.7
3,161,628 - Psest_2965 0.35 +4.4
3,161,673 - Psest_2965 0.37 -1.7
3,161,722 + Psest_2965 0.41 +5.0
3,161,722 + Psest_2965 0.41 +5.0
3,161,722 + Psest_2965 0.41 +4.0
3,161,723 - Psest_2965 0.41 +4.7
3,161,723 - Psest_2965 0.41 +4.6
3,161,723 - Psest_2965 0.41 +5.1
3,161,776 - Psest_2965 0.44 +4.7
3,161,776 - Psest_2965 0.44 +0.9
3,161,792 + Psest_2965 0.45 +1.3
3,161,792 + Psest_2965 0.45 +2.1
3,161,792 + Psest_2965 0.45 +4.1
3,161,792 + Psest_2965 0.45 +3.7
3,161,792 + Psest_2965 0.45 +2.5
3,161,792 + Psest_2965 0.45 +3.0
3,161,793 - Psest_2965 0.45 +3.9
3,161,793 - Psest_2965 0.45 +3.9
3,161,793 - Psest_2965 0.45 +1.5
3,161,793 - Psest_2965 0.45 +2.9
3,161,793 - Psest_2965 0.45 +4.1
3,161,793 - Psest_2965 0.45 +5.0
3,161,793 - Psest_2965 0.45 +3.8
3,161,815 + Psest_2965 0.46 +2.3
3,161,815 + Psest_2965 0.46 +5.7
3,161,815 + Psest_2965 0.46 +0.6
3,161,816 - Psest_2965 0.46 -0.7
3,161,837 + Psest_2965 0.48 +4.5
3,161,838 - Psest_2965 0.48 +4.6
3,161,838 - Psest_2965 0.48 +4.2
3,161,851 + Psest_2965 0.49 +3.7
3,161,851 + Psest_2965 0.49 +4.2
3,161,851 + Psest_2965 0.49 +5.1
3,161,851 + Psest_2965 0.49 +3.6
3,161,851 + Psest_2965 0.49 +1.5
3,161,851 + Psest_2965 0.49 +4.3
3,161,852 - Psest_2965 0.49 +4.5
3,161,852 - Psest_2965 0.49 +3.9
3,161,852 - Psest_2965 0.49 +4.9
3,161,852 - Psest_2965 0.49 +5.7
3,161,852 - Psest_2965 0.49 +4.1
3,161,852 - Psest_2965 0.49 +4.4
3,161,852 - Psest_2965 0.49 +3.5
3,161,852 - Psest_2965 0.49 +5.0
3,161,879 - Psest_2965 0.50 +3.9
3,161,879 - Psest_2965 0.50 +2.1
3,161,901 - Psest_2965 0.52 +5.0
3,161,988 - Psest_2965 0.57 +4.2
3,162,067 + Psest_2965 0.62 +1.8
3,162,086 + Psest_2965 0.63 +2.1
3,162,087 - Psest_2965 0.64 +6.1
3,162,087 - Psest_2965 0.64 +3.0
3,162,087 - Psest_2965 0.64 +3.6
3,162,089 + Psest_2965 0.64 +3.1
3,162,089 + Psest_2965 0.64 +3.6
3,162,090 - Psest_2965 0.64 +2.0
3,162,101 + Psest_2965 0.64 +6.7
3,162,102 - Psest_2965 0.64 +3.0
3,162,103 + Psest_2965 0.65 +3.1
3,162,103 + Psest_2965 0.65 +2.4
3,162,104 - Psest_2965 0.65 +5.7
3,162,104 - Psest_2965 0.65 +3.7
3,162,104 - Psest_2965 0.65 +4.1
3,162,115 + Psest_2965 0.65 +4.8
3,162,116 - Psest_2965 0.65 +4.4
3,162,227 + Psest_2965 0.72 +4.1
3,162,228 - Psest_2965 0.72 +3.7
3,162,228 - Psest_2965 0.72 +3.1
3,162,228 - Psest_2965 0.72 +4.9
3,162,231 - Psest_2965 0.73 +4.8
3,162,231 - Psest_2965 0.73 +5.5
3,162,231 - Psest_2965 0.73 +3.8
3,162,231 - Psest_2965 0.73 +6.0
3,162,255 + Psest_2965 0.74 +4.6
3,162,305 + Psest_2965 0.77 +3.1
3,162,305 + Psest_2965 0.77 +3.3
3,162,306 - Psest_2965 0.77 +3.8
3,162,306 - Psest_2965 0.77 +4.6
3,162,306 - Psest_2965 0.77 +3.8
3,162,306 - Psest_2965 0.77 +2.3
3,162,306 - Psest_2965 0.77 +4.1
3,162,353 - Psest_2965 0.80 +3.6
3,162,367 + Psest_2965 0.81 +3.1
3,162,367 + Psest_2965 0.81 +1.2
3,162,367 + Psest_2965 0.81 +3.5
3,162,368 - Psest_2965 0.81 +3.1
3,162,368 - Psest_2965 0.81 +4.1
3,162,368 - Psest_2965 0.81 +1.4
3,162,373 - Psest_2965 0.82 +2.7
3,162,442 + Psest_2965 0.86 +5.0
3,162,442 + Psest_2965 0.86 +3.0
3,162,442 + Psest_2965 0.86 +6.0
3,162,443 - Psest_2965 0.86 +2.3
3,162,449 + Psest_2965 0.86 +3.3
3,162,449 + Psest_2965 0.86 +1.4
3,162,449 + Psest_2965 0.86 +2.2
3,162,476 + Psest_2965 0.88 +6.1
3,162,476 + Psest_2965 0.88 +4.4
3,162,817 + Psest_2966 0.18 +3.6
3,162,817 + Psest_2966 0.18 +3.2
3,162,817 + Psest_2966 0.18 +3.1
3,162,817 + Psest_2966 0.18 +3.1
3,162,817 + Psest_2966 0.18 +3.0
3,162,818 - Psest_2966 0.18 +0.7
3,162,818 - Psest_2966 0.18 +1.3
3,162,818 - Psest_2966 0.18 +0.3
3,162,818 - Psest_2966 0.18 +1.4
3,162,818 - Psest_2966 0.18 -0.4
3,162,841 + Psest_2966 0.21 +2.4
3,162,841 + Psest_2966 0.21 +3.2
3,162,842 - Psest_2966 0.21 +1.4
3,162,842 - Psest_2966 0.21 -0.7
3,162,845 + Psest_2966 0.22 +4.2
3,162,982 + Psest_2966 0.42 +3.5
3,162,982 + Psest_2966 0.42 +4.8
3,162,983 - Psest_2966 0.42 +4.0
3,162,983 - Psest_2966 0.42 +3.5
3,162,983 - Psest_2966 0.42 +2.8
3,162,983 - Psest_2966 0.42 +7.3
3,162,983 - Psest_2966 0.42 +1.6
3,163,185 - Psest_2966 0.71 +5.3
3,163,185 - Psest_2966 0.71 +5.2
3,163,233 + Psest_2966 0.79 +1.9
3,163,331 - +3.8
3,163,379 + +5.1
3,163,379 + +1.3
3,163,379 + +5.0
3,163,379 + +3.2
3,163,380 - +5.1
3,163,380 - +2.5
3,163,380 - +2.8
3,163,397 + +4.1
3,163,397 + +4.7
3,163,397 + +4.5
3,163,398 - +0.1
3,163,398 - -1.0
3,163,398 - -1.7
3,163,398 - +0.8
3,163,526 + Psest_2967 0.29 -3.5
3,163,529 + Psest_2967 0.29 -1.5
3,163,529 + Psest_2967 0.29 -4.2
3,163,613 - Psest_2967 0.48 +0.7
3,163,613 - Psest_2967 0.48 -3.0

Or see this region's nucleotide sequence