Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2943

Experiment: With vitamins t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	With vitamins t1
3,139,642	+				+1.7
3,139,642	+				-0.8
3,139,642	+				+0.5
3,139,642	+				-1.4
3,139,642	+				-0.1
3,139,642	+				-0.7
3,139,642	+				-0.3
3,139,642	+				-2.2
3,139,642	+				-0.4
3,139,642	+				+0.8
3,139,642	+				-1.0
3,139,642	+				-0.7
3,139,642	+				-1.0
3,139,642	+				+2.5
3,139,642	+				+1.6
3,139,642	+				-0.7
3,139,642	+				+0.6
3,139,642	+				-0.7
3,139,643	-				-0.5
3,139,643	-				-0.5
3,139,643	-				-1.5
3,139,643	-				-1.2
3,139,643	-				-2.1
3,139,643	-				+0.9
3,139,643	-				-0.6
3,139,643	-				-3.1
3,139,643	-				+0.1
3,139,643	-				-0.2
3,139,643	-				-1.2
3,139,643	-				-0.7
3,139,643	-				+2.7
3,139,643	-				+2.9
3,139,643	-				+0.9
3,139,665	-				+2.3
3,139,827	+		Psest_2942	0.22	-2.7
3,139,828	-		Psest_2942	0.22	-0.7
3,139,828	-		Psest_2942	0.22	-0.3
3,139,860	+		Psest_2942	0.26	-0.9
3,139,861	-		Psest_2942	0.26	+0.1
3,139,861	-		Psest_2942	0.26	+1.9
3,139,861	-		Psest_2942	0.26	-0.1
3,139,861	-		Psest_2942	0.26	+1.3
3,139,861	-		Psest_2942	0.26	-0.1
3,139,861	-		Psest_2942	0.26	+1.1
3,139,861	-		Psest_2942	0.26	-0.5
3,139,920	+		Psest_2942	0.34	-1.7
3,139,921	-		Psest_2942	0.34	+0.6
3,139,921	-		Psest_2942	0.34	+1.2
3,139,921	-		Psest_2942	0.34	-0.2
3,139,921	-		Psest_2942	0.34	-0.7
3,140,145	+		Psest_2942	0.63	+0.1
3,140,385	+				+0.8
3,140,385	+				-0.7
3,140,385	+				-1.7
3,140,385	+				+1.3
3,140,386	-				-2.2
3,140,386	-				+2.8
3,140,389	+				-3.0
3,140,389	+				-3.0
3,140,389	+				+2.0
3,140,389	+				+2.5
3,140,389	+				-1.0
3,140,389	+				-0.6
3,140,389	+				+0.0
3,140,389	+				-0.0
3,140,389	+				-1.2
3,140,389	+				-0.2
3,140,389	+				-2.5
3,140,389	+				-0.1
3,140,389	+				-1.5
3,140,389	+				+1.9
3,140,389	+				+0.9
3,140,389	+				+0.7
3,140,389	+				-0.8
3,140,389	+				-0.2
3,140,389	+				+2.3
3,140,389	+				+0.8
3,140,389	+				+0.3
3,140,389	+				-0.4
3,140,389	+				-0.9
3,140,389	+				-0.5
3,140,389	+				+0.0
3,140,389	+				+2.4
3,140,389	+				-2.8
3,140,389	+				-1.0
3,140,389	+				-1.9
3,140,389	+				+1.2
3,140,389	+				+2.0
3,140,390	-				+0.3
3,140,390	-				+1.9
3,140,390	-				-0.1
3,140,390	-				-0.7
3,140,390	-				-0.2
3,140,390	-				-0.2
3,140,390	-				+0.3
3,140,390	-				+0.7
3,140,390	-				-0.1
3,140,390	-				-1.5
3,140,390	-				+0.3
3,140,390	-				-0.7
3,140,390	-				+0.1
3,140,390	-				-0.0
3,140,390	-				-0.3
3,140,390	-				-0.7
3,140,390	-				-1.2
3,140,390	-				-1.2
3,140,390	-				-0.2
3,140,390	-				+0.8
3,140,390	-				+1.5
3,140,390	-				-0.9
3,140,390	-				+0.2
3,140,390	-				+1.2
3,140,390	-				+1.8
3,140,391	+				+0.3
3,140,391	+				+1.3
3,140,391	+				-0.0
3,140,391	+				+0.3
3,140,391	+				-1.5
3,140,391	+				-1.7
3,140,391	+				+0.1
3,140,392	-				-1.7
3,140,392	-				+1.7
3,140,392	-				+0.3
3,140,392	-				+0.4
3,140,429	+				-2.2
3,140,448	-				-1.1
3,140,477	+				-1.2
3,140,477	+				+1.1
3,140,477	+				-0.2
3,140,477	+				-1.7
3,140,477	+				-0.7
3,140,478	-				-0.5
3,140,478	-				+0.7
3,140,478	-				+2.3
3,140,496	+				+0.3
3,140,672	+		Psest_2943	0.18	+0.3
3,140,672	+		Psest_2943	0.18	+1.9
3,140,723	+		Psest_2943	0.24	+2.4
3,140,723	+		Psest_2943	0.24	+0.9
3,140,723	+		Psest_2943	0.24	-1.2
3,140,723	+		Psest_2943	0.24	+0.2
3,140,723	+		Psest_2943	0.24	-0.1
3,140,723	+		Psest_2943	0.24	+0.3
3,140,723	+		Psest_2943	0.24	+0.3
3,140,723	+		Psest_2943	0.24	-0.7
3,140,723	+		Psest_2943	0.24	-1.2
3,140,723	+		Psest_2943	0.24	-0.9
3,140,724	-		Psest_2943	0.24	+0.9
3,140,724	-		Psest_2943	0.24	-0.2
3,140,724	-		Psest_2943	0.24	+0.0
3,140,724	-		Psest_2943	0.24	-1.2
3,140,724	-		Psest_2943	0.24	-2.1
3,140,724	-		Psest_2943	0.24	+1.0
3,140,724	-		Psest_2943	0.24	+1.3
3,140,724	-		Psest_2943	0.24	+1.5
3,140,724	-		Psest_2943	0.24	-0.7
3,140,724	-		Psest_2943	0.24	+0.7
3,140,724	-		Psest_2943	0.24	+0.0
3,140,724	-		Psest_2943	0.24	-0.9
3,140,724	-		Psest_2943	0.24	+0.3
3,140,724	-		Psest_2943	0.24	-0.8
3,140,724	-		Psest_2943	0.24	-2.0
3,140,724	-		Psest_2943	0.24	+0.3
3,140,724	-		Psest_2943	0.24	+0.7
3,140,724	-		Psest_2943	0.24	-2.2
3,140,724	-		Psest_2943	0.24	-2.5
3,140,724	-		Psest_2943	0.24	+1.3
3,140,724	-		Psest_2943	0.24	-2.0
3,140,724	-		Psest_2943	0.24	-1.0
3,140,724	-		Psest_2943	0.24	+0.9
3,140,724	-		Psest_2943	0.24	+0.5
3,140,724	-		Psest_2943	0.24	-1.1
3,140,724	-		Psest_2943	0.24	-0.1
3,140,724	-		Psest_2943	0.24	+1.1
3,140,724	-		Psest_2943	0.24	+0.1
3,140,725	+		Psest_2943	0.24	-0.3
3,140,726	-		Psest_2943	0.25	-1.8
3,140,726	-		Psest_2943	0.25	+1.1
3,141,128	+		Psest_2943	0.72	-0.4
3,141,128	+		Psest_2943	0.72	-0.2
3,141,128	+		Psest_2943	0.72	-2.8
3,141,128	+		Psest_2943	0.72	-1.7
3,141,128	+		Psest_2943	0.72	-0.7
3,141,128	+		Psest_2943	0.72	-0.5
3,141,128	+		Psest_2943	0.72	-1.5
3,141,128	+		Psest_2943	0.72	+0.3
3,141,128	+		Psest_2943	0.72	+0.1
3,141,128	+		Psest_2943	0.72	+0.5
3,141,128	+		Psest_2943	0.72	-3.6
3,141,128	+		Psest_2943	0.72	-1.2
3,141,128	+		Psest_2943	0.72	-1.2
3,141,129	-		Psest_2943	0.72	-1.5
3,141,129	-		Psest_2943	0.72	-0.2
3,141,129	-		Psest_2943	0.72	+0.3
3,141,129	-		Psest_2943	0.72	-1.7
3,141,129	-		Psest_2943	0.72	-0.7
3,141,129	-		Psest_2943	0.72	+1.1
3,141,129	-		Psest_2943	0.72	-1.2
3,141,129	-		Psest_2943	0.72	+0.7
3,141,129	-		Psest_2943	0.72	+0.2
3,141,129	-		Psest_2943	0.72	-0.9
3,141,129	-		Psest_2943	0.72	+1.7
3,141,129	-		Psest_2943	0.72	+1.1
3,141,132	+		Psest_2943	0.73	-1.0
3,141,132	+		Psest_2943	0.73	-0.7
3,141,132	+		Psest_2943	0.73	-1.4
3,141,132	+		Psest_2943	0.73	+1.1
3,141,132	+		Psest_2943	0.73	-0.7
3,141,132	+		Psest_2943	0.73	-0.4
3,141,132	+		Psest_2943	0.73	-0.7
3,141,132	+		Psest_2943	0.73	-0.7
3,141,132	+		Psest_2943	0.73	-0.5
3,141,132	+		Psest_2943	0.73	-0.7
3,141,132	+		Psest_2943	0.73	+2.5
3,141,132	+		Psest_2943	0.73	-1.7
3,141,132	+		Psest_2943	0.73	+0.6
3,141,133	-		Psest_2943	0.73	-2.8
3,141,133	-		Psest_2943	0.73	-0.7
3,141,133	-		Psest_2943	0.73	+0.3
3,141,133	-		Psest_2943	0.73	+0.1
3,141,133	-		Psest_2943	0.73	-0.7
3,141,133	-		Psest_2943	0.73	+0.1
3,141,133	-		Psest_2943	0.73	-0.5
3,141,133	-		Psest_2943	0.73	-0.7
3,141,133	-		Psest_2943	0.73	-3.2
3,141,134	+		Psest_2943	0.73	-0.7
3,141,134	+		Psest_2943	0.73	-0.5
3,141,135	-		Psest_2943	0.73	-0.3
3,141,135	-		Psest_2943	0.73	-0.8
3,141,135	-		Psest_2943	0.73	-0.7
3,141,135	-		Psest_2943	0.73	-0.0
3,141,135	-		Psest_2943	0.73	+0.7
3,141,216	+		Psest_2943	0.83	+1.7
3,141,216	+		Psest_2943	0.83	-0.2
3,141,216	+		Psest_2943	0.83	-1.2
3,141,216	+		Psest_2943	0.83	+3.0
3,141,446	+				+0.3
3,141,447	-				+0.1
3,141,447	-				+1.6
3,141,447	-				+0.3
3,141,447	-				+0.9
3,141,447	-				+0.1
3,141,447	-				+0.1
3,141,448	+				+0.3
3,141,502	+				-1.2
3,141,502	+				+0.3
3,141,502	+				+0.3
3,141,755	-		Psest_2944	0.36	+0.3
3,141,755	-		Psest_2944	0.36	-1.2
3,141,851	+		Psest_2944	0.46	+0.3
3,141,910	+		Psest_2944	0.53	+0.3
3,141,910	+		Psest_2944	0.53	+0.3
3,141,910	+		Psest_2944	0.53	+0.3
3,141,911	-		Psest_2944	0.53	+0.3
3,141,911	-		Psest_2944	0.53	+0.3
3,141,911	-		Psest_2944	0.53	+0.3
3,141,991	-		Psest_2944	0.61	+0.3
3,142,330	+				+0.3
3,142,331	-				+0.3
3,142,359	+				+0.3