Experiment: With vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1592 and Psest_1593 are separated by 10 nucleotides Psest_1593 and Psest_1594 are separated by 31 nucleotides Psest_1594 and Psest_1595 are separated by 20 nucleotides Psest_1595 and Psest_1596 are separated by 484 nucleotides
Psest_1592: Psest_1592 - hypothetical protein, at 1,696,825 to 1,697,379
_1592
Psest_1593: Psest_1593 - hypothetical protein, at 1,697,390 to 1,697,740
_1593
Psest_1594: Psest_1594 - Predicted metal-binding protein, at 1,697,772 to 1,698,218
_1594
Psest_1595: Psest_1595 - Copper chaperone, at 1,698,239 to 1,698,496
_1595
Psest_1596: Psest_1596 - ATPase, P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase, at 1,698,981 to 1,701,500
_1596
Position (kb)
1698
1699 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1697.332 kb on + strand at 1697.332 kb on + strand at 1697.391 kb on + strand at 1697.428 kb on + strand, within Psest_1593 at 1697.544 kb on + strand, within Psest_1593 at 1697.545 kb on - strand, within Psest_1593 at 1697.556 kb on + strand, within Psest_1593 at 1697.556 kb on + strand, within Psest_1593 at 1697.556 kb on + strand, within Psest_1593 at 1697.557 kb on - strand, within Psest_1593 at 1697.557 kb on - strand, within Psest_1593 at 1697.557 kb on - strand, within Psest_1593 at 1697.557 kb on - strand, within Psest_1593 at 1697.601 kb on + strand, within Psest_1593 at 1697.601 kb on + strand, within Psest_1593 at 1697.601 kb on + strand, within Psest_1593 at 1697.602 kb on - strand, within Psest_1593 at 1697.602 kb on - strand, within Psest_1593 at 1697.602 kb on - strand, within Psest_1593 at 1697.602 kb on - strand, within Psest_1593 at 1697.718 kb on + strand at 1697.718 kb on + strand at 1697.718 kb on + strand at 1697.718 kb on + strand at 1697.719 kb on - strand at 1697.719 kb on - strand at 1697.798 kb on - strand at 1697.869 kb on + strand, within Psest_1594 at 1697.869 kb on + strand, within Psest_1594 at 1698.076 kb on - strand, within Psest_1594 at 1698.100 kb on + strand, within Psest_1594 at 1698.100 kb on + strand, within Psest_1594 at 1698.100 kb on + strand, within Psest_1594 at 1698.100 kb on + strand, within Psest_1594 at 1698.100 kb on + strand, within Psest_1594 at 1698.101 kb on - strand, within Psest_1594 at 1698.208 kb on + strand at 1698.208 kb on + strand at 1698.209 kb on - strand at 1698.209 kb on - strand at 1698.244 kb on + strand at 1698.272 kb on + strand, within Psest_1595 at 1698.558 kb on + strand at 1698.559 kb on - strand at 1698.627 kb on + strand at 1698.627 kb on + strand at 1698.692 kb on + strand at 1698.693 kb on - strand at 1698.696 kb on + strand at 1698.697 kb on - strand at 1698.714 kb on - strand at 1698.836 kb on + strand at 1698.837 kb on - strand at 1698.837 kb on - strand at 1698.837 kb on - strand at 1698.837 kb on - strand at 1698.837 kb on - strand at 1698.964 kb on + strand at 1698.964 kb on + strand at 1698.965 kb on - strand at 1698.976 kb on + strand at 1698.977 kb on - strand at 1698.977 kb on - strand at 1698.977 kb on - strand at 1698.977 kb on - strand at 1699.199 kb on + strand at 1699.237 kb on + strand, within Psest_1596 at 1699.238 kb on - strand, within Psest_1596 at 1699.489 kb on - strand, within Psest_1596
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t1 remove 1,697,332 + -1.8 1,697,332 + -0.1 1,697,391 + +0.3 1,697,428 + Psest_1593 0.11 +2.7 1,697,544 + Psest_1593 0.44 +0.3 1,697,545 - Psest_1593 0.44 -2.0 1,697,556 + Psest_1593 0.47 -1.1 1,697,556 + Psest_1593 0.47 -1.5 1,697,556 + Psest_1593 0.47 +1.0 1,697,557 - Psest_1593 0.48 -0.7 1,697,557 - Psest_1593 0.48 -0.3 1,697,557 - Psest_1593 0.48 +0.7 1,697,557 - Psest_1593 0.48 +0.3 1,697,601 + Psest_1593 0.60 -0.2 1,697,601 + Psest_1593 0.60 -2.5 1,697,601 + Psest_1593 0.60 +0.1 1,697,602 - Psest_1593 0.60 -1.0 1,697,602 - Psest_1593 0.60 -0.3 1,697,602 - Psest_1593 0.60 +1.1 1,697,602 - Psest_1593 0.60 -0.7 1,697,718 + -2.2 1,697,718 + +0.8 1,697,718 + -1.8 1,697,718 + -1.6 1,697,719 - +1.9 1,697,719 - +1.4 1,697,798 - -0.3 1,697,869 + Psest_1594 0.22 +1.7 1,697,869 + Psest_1594 0.22 -2.8 1,698,076 - Psest_1594 0.68 +0.1 1,698,100 + Psest_1594 0.73 +2.1 1,698,100 + Psest_1594 0.73 -0.3 1,698,100 + Psest_1594 0.73 +0.7 1,698,100 + Psest_1594 0.73 +1.3 1,698,100 + Psest_1594 0.73 -0.7 1,698,101 - Psest_1594 0.74 +0.5 1,698,208 + -0.4 1,698,208 + +0.3 1,698,209 - +0.5 1,698,209 - -0.4 1,698,244 + -0.8 1,698,272 + Psest_1595 0.13 -0.7 1,698,558 + +0.3 1,698,559 - -0.4 1,698,627 + +1.8 1,698,627 + +0.7 1,698,692 + +0.7 1,698,693 - +2.2 1,698,696 + -0.9 1,698,697 - +1.9 1,698,714 - +0.5 1,698,836 + -0.8 1,698,837 - -0.0 1,698,837 - +0.7 1,698,837 - +1.3 1,698,837 - -0.1 1,698,837 - +4.1 1,698,964 + -0.4 1,698,964 + -2.3 1,698,965 - -2.5 1,698,976 + +0.3 1,698,977 - +1.1 1,698,977 - -1.7 1,698,977 - +1.3 1,698,977 - -0.2 1,699,199 + -0.5 1,699,237 + Psest_1596 0.10 +2.3 1,699,238 - Psest_1596 0.10 -0.3 1,699,489 - Psest_1596 0.20 -0.5
Or see this region's nucleotide sequence