Experiment: PEG (Day 2) - Cage5;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4042 and BT4043 are separated by 53 nucleotides BT4043 and BT4044 are separated by 70 nucleotides
BT4042: BT4042 - putative Mg2+ transporter MgtE (NCBI ptt file), at 5,258,012 to 5,259,352
BT4042
BT4043: BT4043 - dimethyladenosine transferase (NCBI ptt file), at 5,259,406 to 5,260,209
BT4043
BT4044: BT4044 - putative dolichol-P-glucose synthetase (NCBI ptt file), at 5,260,280 to 5,261,266
BT4044
Position (kb) 5259
5260
5261 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5258.473 kb on + strand, within BT4042 at 5258.525 kb on + strand, within BT4042 at 5258.525 kb on + strand, within BT4042 at 5258.529 kb on - strand, within BT4042 at 5258.529 kb on - strand, within BT4042 at 5258.842 kb on - strand, within BT4042 at 5258.843 kb on + strand, within BT4042 at 5258.843 kb on + strand, within BT4042 at 5258.844 kb on - strand, within BT4042 at 5258.844 kb on - strand, within BT4042 at 5258.844 kb on - strand, within BT4042 at 5258.844 kb on - strand, within BT4042 at 5258.844 kb on - strand, within BT4042 at 5258.844 kb on - strand, within BT4042 at 5258.847 kb on + strand, within BT4042 at 5258.848 kb on - strand, within BT4042 at 5258.850 kb on + strand, within BT4042 at 5258.853 kb on - strand, within BT4042 at 5259.090 kb on + strand, within BT4042 at 5259.207 kb on + strand, within BT4042 at 5259.326 kb on + strand at 5259.501 kb on + strand, within BT4043 at 5259.552 kb on + strand, within BT4043 at 5259.553 kb on - strand, within BT4043 at 5259.562 kb on + strand, within BT4043 at 5259.720 kb on - strand, within BT4043 at 5259.724 kb on + strand, within BT4043 at 5259.725 kb on - strand, within BT4043 at 5259.725 kb on - strand, within BT4043 at 5259.730 kb on - strand, within BT4043 at 5259.742 kb on + strand, within BT4043 at 5259.748 kb on + strand, within BT4043 at 5259.793 kb on - strand, within BT4043 at 5259.814 kb on + strand, within BT4043 at 5259.967 kb on - strand, within BT4043 at 5260.020 kb on - strand, within BT4043 at 5260.076 kb on - strand, within BT4043 at 5260.093 kb on + strand, within BT4043 at 5260.102 kb on + strand, within BT4043 at 5260.103 kb on - strand, within BT4043 at 5260.140 kb on + strand at 5260.218 kb on + strand at 5260.218 kb on + strand at 5260.275 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 2) - Cage5;Mouse1 remove 5,258,473 + BT4042 0.34 -1.0 5,258,525 + BT4042 0.38 -3.8 5,258,525 + BT4042 0.38 -1.4 5,258,529 - BT4042 0.39 -1.4 5,258,529 - BT4042 0.39 -0.5 5,258,842 - BT4042 0.62 +2.3 5,258,843 + BT4042 0.62 -1.2 5,258,843 + BT4042 0.62 +1.5 5,258,844 - BT4042 0.62 -1.8 5,258,844 - BT4042 0.62 -1.0 5,258,844 - BT4042 0.62 +0.6 5,258,844 - BT4042 0.62 -1.0 5,258,844 - BT4042 0.62 -1.1 5,258,844 - BT4042 0.62 -0.4 5,258,847 + BT4042 0.62 -0.9 5,258,848 - BT4042 0.62 -2.4 5,258,850 + BT4042 0.62 -0.8 5,258,853 - BT4042 0.63 -1.8 5,259,090 + BT4042 0.80 -3.4 5,259,207 + BT4042 0.89 +0.2 5,259,326 + -1.3 5,259,501 + BT4043 0.12 -4.1 5,259,552 + BT4043 0.18 -1.0 5,259,553 - BT4043 0.18 -3.5 5,259,562 + BT4043 0.19 -1.2 5,259,720 - BT4043 0.39 -2.9 5,259,724 + BT4043 0.40 -0.4 5,259,725 - BT4043 0.40 -4.6 5,259,725 - BT4043 0.40 -0.8 5,259,730 - BT4043 0.40 -3.6 5,259,742 + BT4043 0.42 -0.4 5,259,748 + BT4043 0.43 -3.1 5,259,793 - BT4043 0.48 -2.0 5,259,814 + BT4043 0.51 -0.0 5,259,967 - BT4043 0.70 -3.0 5,260,020 - BT4043 0.76 -1.8 5,260,076 - BT4043 0.83 -0.8 5,260,093 + BT4043 0.85 -1.4 5,260,102 + BT4043 0.87 -1.4 5,260,103 - BT4043 0.87 -3.2 5,260,140 + -1.8 5,260,218 + -1.4 5,260,218 + -2.8 5,260,275 + -3.0
Or see this region's nucleotide sequence