Experiment: PEG (Day 2) - Cage5;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0315 and BT0316 are separated by 33 nucleotides BT0316 and BT0317 are separated by 312 nucleotides
BT0315: BT0315 - hypothetical protein (NCBI ptt file), at 378,905 to 380,194
BT0315
BT0316: BT0316 - putative hemin receptor (NCBI ptt file), at 380,228 to 381,832
BT0316
BT0317: BT0317 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 382,145 to 385,333
BT0317
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 379.301 kb on + strand, within BT0315 at 379.767 kb on + strand, within BT0315 at 379.767 kb on + strand, within BT0315 at 379.771 kb on + strand, within BT0315 at 379.802 kb on + strand, within BT0315 at 379.802 kb on + strand, within BT0315 at 379.825 kb on + strand, within BT0315 at 379.895 kb on + strand, within BT0315 at 379.952 kb on + strand, within BT0315 at 379.960 kb on + strand, within BT0315 at 379.960 kb on + strand, within BT0315 at 379.986 kb on - strand, within BT0315 at 379.999 kb on + strand, within BT0315 at 380.032 kb on + strand, within BT0315 at 380.056 kb on + strand, within BT0315 at 380.072 kb on + strand at 380.128 kb on + strand at 380.198 kb on + strand at 380.199 kb on - strand at 380.205 kb on + strand at 380.207 kb on + strand at 380.263 kb on + strand at 380.376 kb on + strand at 380.377 kb on - strand at 380.386 kb on + strand at 380.416 kb on + strand, within BT0316 at 380.435 kb on - strand, within BT0316 at 380.442 kb on + strand, within BT0316 at 380.442 kb on + strand, within BT0316 at 380.442 kb on + strand, within BT0316 at 380.486 kb on + strand, within BT0316 at 380.534 kb on - strand, within BT0316 at 380.537 kb on - strand, within BT0316 at 380.538 kb on + strand, within BT0316 at 380.606 kb on + strand, within BT0316 at 380.633 kb on + strand, within BT0316 at 380.633 kb on + strand, within BT0316 at 380.635 kb on + strand, within BT0316 at 380.656 kb on + strand, within BT0316 at 380.719 kb on + strand, within BT0316 at 380.829 kb on + strand, within BT0316 at 380.858 kb on + strand, within BT0316 at 380.862 kb on + strand, within BT0316 at 380.882 kb on + strand, within BT0316 at 380.932 kb on + strand, within BT0316 at 380.947 kb on + strand, within BT0316 at 380.949 kb on + strand, within BT0316 at 381.039 kb on - strand, within BT0316 at 381.040 kb on + strand, within BT0316 at 381.085 kb on + strand, within BT0316 at 381.085 kb on + strand, within BT0316 at 381.185 kb on - strand, within BT0316 at 381.223 kb on + strand, within BT0316 at 381.236 kb on + strand, within BT0316 at 381.236 kb on + strand, within BT0316 at 381.237 kb on - strand, within BT0316 at 381.238 kb on + strand, within BT0316 at 381.239 kb on - strand, within BT0316 at 381.347 kb on + strand, within BT0316 at 381.349 kb on + strand, within BT0316 at 381.365 kb on + strand, within BT0316 at 381.367 kb on + strand, within BT0316 at 381.371 kb on + strand, within BT0316 at 381.372 kb on - strand, within BT0316 at 381.433 kb on + strand, within BT0316 at 381.555 kb on + strand, within BT0316 at 381.562 kb on + strand, within BT0316 at 381.566 kb on + strand, within BT0316 at 381.567 kb on - strand, within BT0316 at 381.567 kb on - strand, within BT0316 at 381.659 kb on - strand, within BT0316 at 381.666 kb on - strand, within BT0316 at 381.667 kb on + strand, within BT0316 at 381.716 kb on + strand at 381.722 kb on + strand at 381.722 kb on + strand at 381.723 kb on - strand at 381.731 kb on + strand at 381.731 kb on + strand at 381.731 kb on + strand at 381.790 kb on + strand at 381.790 kb on + strand at 381.796 kb on + strand at 381.873 kb on + strand at 381.937 kb on - strand at 382.145 kb on - strand at 382.168 kb on - strand at 382.271 kb on - strand at 382.337 kb on - strand at 382.468 kb on + strand, within BT0317 at 382.469 kb on - strand, within BT0317 at 382.473 kb on + strand, within BT0317 at 382.506 kb on + strand, within BT0317 at 382.526 kb on - strand, within BT0317 at 382.763 kb on - strand, within BT0317 at 382.799 kb on - strand, within BT0317
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 2) - Cage5;Mouse1 remove 379,301 + BT0315 0.31 +1.5 379,767 + BT0315 0.67 +1.5 379,767 + BT0315 0.67 -0.9 379,771 + BT0315 0.67 +3.3 379,802 + BT0315 0.70 -0.5 379,802 + BT0315 0.70 +1.5 379,825 + BT0315 0.71 +0.9 379,895 + BT0315 0.77 +1.3 379,952 + BT0315 0.81 -1.0 379,960 + BT0315 0.82 +0.2 379,960 + BT0315 0.82 -0.5 379,986 - BT0315 0.84 -1.7 379,999 + BT0315 0.85 +0.0 380,032 + BT0315 0.87 -0.1 380,056 + BT0315 0.89 +0.5 380,072 + -0.1 380,128 + -1.3 380,198 + +0.5 380,199 - +1.2 380,205 + -1.9 380,207 + +0.7 380,263 + +0.8 380,376 + +0.8 380,377 - +0.6 380,386 + +3.3 380,416 + BT0316 0.12 +0.6 380,435 - BT0316 0.13 -0.1 380,442 + BT0316 0.13 -0.2 380,442 + BT0316 0.13 +1.7 380,442 + BT0316 0.13 +0.5 380,486 + BT0316 0.16 +0.3 380,534 - BT0316 0.19 -1.2 380,537 - BT0316 0.19 +0.5 380,538 + BT0316 0.19 +1.8 380,606 + BT0316 0.24 -0.8 380,633 + BT0316 0.25 +1.3 380,633 + BT0316 0.25 +1.3 380,635 + BT0316 0.25 -0.1 380,656 + BT0316 0.27 +3.8 380,719 + BT0316 0.31 +1.3 380,829 + BT0316 0.37 +2.4 380,858 + BT0316 0.39 +1.0 380,862 + BT0316 0.40 -0.5 380,882 + BT0316 0.41 +1.5 380,932 + BT0316 0.44 -0.4 380,947 + BT0316 0.45 +0.5 380,949 + BT0316 0.45 +0.7 381,039 - BT0316 0.51 +1.8 381,040 + BT0316 0.51 +1.6 381,085 + BT0316 0.53 +1.3 381,085 + BT0316 0.53 +2.4 381,185 - BT0316 0.60 +0.9 381,223 + BT0316 0.62 +2.7 381,236 + BT0316 0.63 +1.8 381,236 + BT0316 0.63 +1.1 381,237 - BT0316 0.63 +2.5 381,238 + BT0316 0.63 +0.1 381,239 - BT0316 0.63 -1.1 381,347 + BT0316 0.70 +1.5 381,349 + BT0316 0.70 +0.2 381,365 + BT0316 0.71 +0.8 381,367 + BT0316 0.71 +0.9 381,371 + BT0316 0.71 +0.4 381,372 - BT0316 0.71 +1.5 381,433 + BT0316 0.75 +1.5 381,555 + BT0316 0.83 +2.2 381,562 + BT0316 0.83 +2.1 381,566 + BT0316 0.83 +1.8 381,567 - BT0316 0.83 +0.1 381,567 - BT0316 0.83 -0.2 381,659 - BT0316 0.89 +1.2 381,666 - BT0316 0.90 +0.3 381,667 + BT0316 0.90 +0.6 381,716 + +0.9 381,722 + +1.7 381,722 + +1.0 381,723 - +0.5 381,731 + +2.5 381,731 + +1.8 381,731 + +0.9 381,790 + +2.4 381,790 + +1.6 381,796 + +0.5 381,873 + +1.5 381,937 - -0.0 382,145 - -0.5 382,168 - -2.2 382,271 - -0.2 382,337 - +2.5 382,468 + BT0317 0.10 -1.7 382,469 - BT0317 0.10 -2.4 382,473 + BT0317 0.10 -1.3 382,506 + BT0317 0.11 -1.6 382,526 - BT0317 0.12 -0.5 382,763 - BT0317 0.19 -0.7 382,799 - BT0317 0.21 -2.4
Or see this region's nucleotide sequence