Experiment: PEG (Day 2) - Cage5;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0301 and BT0302 are separated by 15 nucleotides BT0302 and BT0303 are separated by 149 nucleotides
BT0301: BT0301 - ATP-binding transport protein natA (Na+ ABC transporter) (NCBI ptt file), at 358,006 to 359,517
BT0301
BT0302: BT0302 - hypothetical protein (NCBI ptt file), at 359,533 to 360,234
BT0302
BT0303: BT0303 - putative patatin-like phospholipase (NCBI ptt file), at 360,384 to 362,600
BT0303
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 358.579 kb on + strand, within BT0301 at 358.596 kb on + strand, within BT0301 at 358.596 kb on + strand, within BT0301 at 358.597 kb on - strand, within BT0301 at 358.597 kb on - strand, within BT0301 at 358.597 kb on - strand, within BT0301 at 358.598 kb on + strand, within BT0301 at 358.731 kb on + strand, within BT0301 at 358.731 kb on + strand, within BT0301 at 358.810 kb on + strand, within BT0301 at 358.811 kb on - strand, within BT0301 at 358.849 kb on + strand, within BT0301 at 358.850 kb on - strand, within BT0301 at 358.850 kb on - strand, within BT0301 at 358.936 kb on + strand, within BT0301 at 358.994 kb on - strand, within BT0301 at 359.013 kb on + strand, within BT0301 at 359.017 kb on + strand, within BT0301 at 359.058 kb on + strand, within BT0301 at 359.071 kb on - strand, within BT0301 at 359.099 kb on + strand, within BT0301 at 359.106 kb on + strand, within BT0301 at 359.217 kb on + strand, within BT0301 at 359.229 kb on + strand, within BT0301 at 359.230 kb on - strand, within BT0301 at 359.347 kb on - strand, within BT0301 at 359.388 kb on - strand at 359.395 kb on - strand at 359.447 kb on - strand at 359.488 kb on + strand at 359.750 kb on + strand, within BT0302 at 359.815 kb on - strand, within BT0302 at 359.819 kb on - strand, within BT0302 at 359.821 kb on - strand, within BT0302 at 359.901 kb on - strand, within BT0302 at 359.979 kb on + strand, within BT0302 at 359.979 kb on + strand, within BT0302 at 360.020 kb on + strand, within BT0302 at 360.021 kb on - strand, within BT0302 at 360.030 kb on + strand, within BT0302 at 360.346 kb on - strand at 360.350 kb on - strand at 360.351 kb on + strand at 360.362 kb on - strand at 360.386 kb on - strand at 360.394 kb on + strand at 360.471 kb on - strand at 360.479 kb on + strand at 360.479 kb on + strand at 360.498 kb on - strand at 360.522 kb on + strand at 360.553 kb on + strand at 360.558 kb on - strand at 360.724 kb on + strand, within BT0303 at 360.757 kb on + strand, within BT0303 at 360.846 kb on - strand, within BT0303 at 360.846 kb on - strand, within BT0303 at 360.857 kb on + strand, within BT0303 at 360.932 kb on + strand, within BT0303 at 360.935 kb on - strand, within BT0303 at 360.939 kb on + strand, within BT0303 at 361.030 kb on + strand, within BT0303 at 361.105 kb on + strand, within BT0303 at 361.112 kb on - strand, within BT0303 at 361.172 kb on + strand, within BT0303 at 361.216 kb on + strand, within BT0303
Per-strain Table
Position Strand Gene LocusTag Fraction PEG (Day 2) - Cage5;Mouse1 remove 358,579 + BT0301 0.38 -1.8 358,596 + BT0301 0.39 -1.1 358,596 + BT0301 0.39 -0.5 358,597 - BT0301 0.39 -1.1 358,597 - BT0301 0.39 -2.5 358,597 - BT0301 0.39 -0.1 358,598 + BT0301 0.39 -1.8 358,731 + BT0301 0.48 -0.5 358,731 + BT0301 0.48 -2.4 358,810 + BT0301 0.53 -1.5 358,811 - BT0301 0.53 -0.2 358,849 + BT0301 0.56 -3.2 358,850 - BT0301 0.56 +0.3 358,850 - BT0301 0.56 -2.2 358,936 + BT0301 0.62 -1.1 358,994 - BT0301 0.65 -1.6 359,013 + BT0301 0.67 -1.3 359,017 + BT0301 0.67 -0.1 359,058 + BT0301 0.70 -1.2 359,071 - BT0301 0.70 +0.5 359,099 + BT0301 0.72 -1.1 359,106 + BT0301 0.73 +0.5 359,217 + BT0301 0.80 -0.1 359,229 + BT0301 0.81 -1.1 359,230 - BT0301 0.81 -1.3 359,347 - BT0301 0.89 -0.3 359,388 - -1.3 359,395 - +1.1 359,447 - -0.5 359,488 + -0.1 359,750 + BT0302 0.31 -0.3 359,815 - BT0302 0.40 -1.6 359,819 - BT0302 0.41 -2.6 359,821 - BT0302 0.41 +0.0 359,901 - BT0302 0.52 -1.1 359,979 + BT0302 0.64 -1.3 359,979 + BT0302 0.64 -2.5 360,020 + BT0302 0.69 -1.2 360,021 - BT0302 0.70 -0.5 360,030 + BT0302 0.71 -2.6 360,346 - -0.2 360,350 - -1.2 360,351 + -0.5 360,362 - +0.9 360,386 - -1.7 360,394 + -0.8 360,471 - -1.5 360,479 + -0.1 360,479 + -1.3 360,498 - -0.5 360,522 + -1.3 360,553 + +0.9 360,558 - +0.2 360,724 + BT0303 0.15 -2.2 360,757 + BT0303 0.17 -2.2 360,846 - BT0303 0.21 -2.8 360,846 - BT0303 0.21 -0.5 360,857 + BT0303 0.21 -0.5 360,932 + BT0303 0.25 -2.7 360,935 - BT0303 0.25 -0.8 360,939 + BT0303 0.25 -0.1 361,030 + BT0303 0.29 -2.5 361,105 + BT0303 0.33 -1.5 361,112 - BT0303 0.33 -1.6 361,172 + BT0303 0.36 -2.3 361,216 + BT0303 0.38 -0.5
Or see this region's nucleotide sequence