Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4121

Experiment: PEG (Day 2) - Cage3;Mouse3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PEG (Day 2) - Cage3;Mouse3
5,396,049	+		BT4120	0.44	-0.6
5,396,087	+		BT4120	0.46	-0.5
5,396,088	-		BT4120	0.46	-0.0
5,396,111	+		BT4120	0.48	-2.3
5,396,118	+				+1.3
5,396,118	+		BT4120	0.48	+1.0
5,396,119	-		BT4120	0.48	-0.0
5,396,119	-		BT4120	0.48	-3.0
5,396,296	+		BT4120	0.59	-0.3
5,396,297	-		BT4120	0.59	-2.6
5,396,336	+		BT4120	0.61	-1.5
5,396,391	+		BT4120	0.65	-0.4
5,396,391	+		BT4120	0.65	+0.3
5,396,392	-		BT4120	0.65	-0.2
5,396,412	-		BT4120	0.66	+1.0
5,396,443	+		BT4120	0.68	-1.9
5,396,450	+		BT4120	0.68	-2.3
5,396,451	-		BT4120	0.68	-0.6
5,396,451	-		BT4120	0.68	-1.9
5,396,555	+		BT4120	0.74	-0.9
5,396,567	+		BT4120	0.75	-2.6
5,396,568	-		BT4120	0.75	-2.0
5,396,577	-		BT4120	0.76	-1.4
5,396,597	+		BT4120	0.77	+0.6
5,396,613	-		BT4120	0.78	-2.3
5,396,666	-		BT4120	0.81	-1.6
5,396,785	-		BT4120	0.88	-1.7
5,396,785	-		BT4120	0.88	-1.0
5,396,795	-		BT4120	0.89	-1.8
5,396,795	-		BT4120	0.89	-0.9
5,396,795	-		BT4120	0.89	-3.2
5,396,829	-				-2.9
5,396,885	+				+1.0
5,396,922	-				+0.1
5,397,003	-				-0.8
5,397,004	+				-0.6
5,397,064	-				-1.0
5,397,072	+				+1.0
5,397,135	+				-2.0
5,397,199	+				-1.2
5,397,202	+				-1.0
5,397,202	+				-1.3
5,397,202	+				-2.2
5,397,203	-				-0.6
5,397,205	+				-0.2
5,397,267	-				-2.1
5,397,268	+				-2.3
5,397,276	-				-3.2
5,397,373	+		BT4121	0.11	-0.8
5,397,492	+		BT4121	0.14	-1.0
5,397,492	+		BT4121	0.14	-0.2
5,397,493	-		BT4121	0.14	-3.7
5,397,493	-		BT4121	0.14	-3.8
5,397,536	+		BT4121	0.15	-0.0
5,397,536	+		BT4121	0.15	-3.2
5,397,625	-		BT4121	0.18	-0.0
5,397,662	-		BT4121	0.19	+1.0
5,397,688	+		BT4121	0.20	-1.9
5,397,688	+		BT4121	0.20	+0.4
5,397,699	+		BT4121	0.20	-0.8
5,397,756	+		BT4121	0.22	-1.3
5,397,756	+		BT4121	0.22	-1.0
5,397,784	-		BT4121	0.23	-0.6
5,397,790	+		BT4121	0.23	-1.0
5,397,860	+		BT4121	0.25	-0.4
5,397,873	-		BT4121	0.25	-0.8
5,397,898	+		BT4121	0.26	-0.3
5,397,911	+		BT4121	0.26	-2.4
5,397,934	+		BT4121	0.27	-1.8
5,397,935	-		BT4121	0.27	+0.4
5,397,935	-		BT4121	0.27	-1.8
5,398,058	+		BT4121	0.31	-1.2
5,398,059	-		BT4121	0.31	-2.5
5,398,059	-		BT4121	0.31	-1.8
5,398,061	+		BT4121	0.31	-2.3
5,398,061	+		BT4121	0.31	-2.2
5,398,062	-		BT4121	0.31	-1.1
5,398,077	-		BT4121	0.31	+0.4
5,398,114	+		BT4121	0.32	-0.4
5,398,121	+		BT4121	0.32	-0.3
5,398,122	-		BT4121	0.32	-1.8
5,398,127	+		BT4121	0.33	-3.2
5,398,275	-		BT4121	0.37	-0.6
5,398,276	+		BT4121	0.37	-1.5
5,398,277	-		BT4121	0.37	+2.0
5,398,277	-		BT4121	0.37	+1.2
5,398,291	+		BT4121	0.37	-1.8
5,398,291	+		BT4121	0.37	-0.9
5,398,292	-		BT4121	0.37	-1.0
5,398,303	+		BT4121	0.38	-3.0
5,398,367	-		BT4121	0.40	-0.0
5,398,375	+		BT4121	0.40	-1.7
5,398,379	+		BT4121	0.40	-1.1
5,398,385	-		BT4121	0.40	-1.2
5,398,385	-		BT4121	0.40	+0.4
5,398,500	-		BT4121	0.44	-1.8
5,398,580	-		BT4121	0.46	-0.9
5,398,601	+		BT4121	0.46	-1.6
5,398,601	+		BT4121	0.46	-0.5
5,398,601	+		BT4121	0.46	-1.2
5,398,602	-		BT4121	0.46	-0.8
5,398,606	-		BT4121	0.47	-1.7
5,398,606	-		BT4121	0.47	-1.3
5,398,641	-		BT4121	0.48	+0.3
5,398,643	-		BT4121	0.48	-1.1
5,398,673	-		BT4121	0.49	-0.2
5,398,695	+		BT4121	0.49	-0.9
5,398,703	-		BT4121	0.49	+1.0
5,398,703	-		BT4121	0.49	-1.8
5,398,708	+		BT4121	0.50	-0.6
5,398,740	-		BT4121	0.51	-2.0
5,398,743	+		BT4121	0.51	-1.7
5,398,743	+		BT4121	0.51	-2.5
5,398,743	+		BT4121	0.51	-0.0
5,398,748	+		BT4121	0.51	-0.6
5,398,749	-		BT4121	0.51	-0.0
5,398,756	+		BT4121	0.51	-1.3
5,398,756	+		BT4121	0.51	-1.0
5,398,772	-		BT4121	0.51	-1.6
5,398,835	+		BT4121	0.53	-1.3
5,398,933	+		BT4121	0.56	-1.3
5,398,971	-		BT4121	0.57	-2.2
5,398,988	+		BT4121	0.58	-1.0
5,398,994	+		BT4121	0.58	-1.6
5,399,006	+		BT4121	0.58	-0.9
5,399,008	+		BT4121	0.58	+0.4
5,399,009	-		BT4121	0.58	-0.3
5,399,009	-		BT4121	0.58	+2.6
5,399,009	-		BT4121	0.58	-1.4
5,399,020	+		BT4121	0.59	-0.6
5,399,021	-		BT4121	0.59	-1.3
5,399,045	-		BT4121	0.59	+1.0
5,399,158	-		BT4121	0.63	-1.2
5,399,191	+		BT4121	0.64	-1.8
5,399,272	+		BT4121	0.66	+0.4
5,399,336	-		BT4121	0.68	-1.3
5,399,397	-		BT4121	0.70	-1.0
5,399,397	-		BT4121	0.70	-1.6
5,399,401	+		BT4121	0.70	-2.5
5,399,401	+		BT4121	0.70	+0.2
5,399,402	-		BT4121	0.70	-2.1
5,399,472	-		BT4121	0.72	-2.0
5,399,500	+		BT4121	0.73	-2.5
5,399,501	-		BT4121	0.73	-0.0
5,399,558	-		BT4121	0.74	-2.5
5,399,561	-		BT4121	0.74	-1.8
5,399,590	+		BT4121	0.75	-0.8
5,399,591	-		BT4121	0.75	-2.8
5,399,591	-		BT4121	0.75	-1.6
5,399,591	-		BT4121	0.75	-0.8
5,399,622	-		BT4121	0.76	+1.0
5,399,624	-		BT4121	0.76	-2.1
5,399,624	-		BT4121	0.76	-0.0
5,399,669	+		BT4121	0.78	-0.6
5,399,669	+		BT4121	0.78	-3.0
5,399,753	+		BT4121	0.80	-0.6
5,399,775	-		BT4121	0.81	-1.1
5,399,775	-		BT4121	0.81	-2.0
5,399,797	+		BT4121	0.81	+0.8
5,399,802	-		BT4121	0.81	-2.7
5,399,924	+		BT4121	0.85	+2.0
5,399,954	+		BT4121	0.86	-2.0
5,400,033	+		BT4121	0.88	-1.8
5,400,034	-		BT4121	0.88	-0.3
5,400,056	-		BT4121	0.89	-2.8
5,400,068	-		BT4121	0.89	-1.3
5,400,073	+		BT4121	0.89	-1.7
5,400,081	+		BT4121	0.90	-2.2
5,400,109	+				-1.2
5,400,140	-				-4.1
5,400,211	+				-0.0
5,400,211	+				-1.3
5,400,228	-				-2.4
5,400,228	-				-0.6
5,400,231	+				-1.6
5,400,231	+				-0.9
5,400,232	-				-0.7
5,400,253	+				-1.6
5,400,254	-				-2.2
5,400,262	+				-0.6
5,400,335	+				+1.0
5,400,336	-				-0.7
5,400,362	-				-2.0
5,400,362	-				-0.3
5,400,364	+				-1.0
5,400,365	-				-1.9
5,400,365	-				-1.8
5,400,368	+				-1.5
5,400,369	-				-0.6
5,400,475	-				-1.3
5,400,502	-				-1.9
5,400,502	-				-2.5
5,400,532	-				+0.8
5,400,538	-				-0.7
5,400,599	+				-0.0
5,400,622	+				-2.9
5,400,656	-				-2.0
5,400,656	-				-0.8
5,400,656	-				-0.8
5,400,743	-		BT4122	0.14	+0.1
5,400,761	+		BT4122	0.15	-0.0
5,400,862	-		BT4122	0.20	-1.0
5,400,869	+		BT4122	0.20	-1.4
5,400,869	+		BT4122	0.20	-0.8
5,400,959	+		BT4122	0.24	-2.2
5,400,990	+		BT4122	0.26	-0.0
5,400,991	-		BT4122	0.26	-1.4
5,400,994	+		BT4122	0.26	-3.1
5,401,008	+		BT4122	0.27	-0.6
5,401,180	+		BT4122	0.35	-1.6
5,401,204	+		BT4122	0.36	-3.8
5,401,204	+		BT4122	0.36	-0.9
5,401,224	+		BT4122	0.37	-0.6
5,401,349	+		BT4122	0.43	-1.0
5,401,378	-		BT4122	0.45	-1.0
5,401,391	+		BT4122	0.45	-1.8
5,401,392	-		BT4122	0.45	-1.2
5,401,435	+		BT4122	0.47	+1.0
5,401,436	-		BT4122	0.47	-1.1