Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3134

Experiment: PEG (Day 1) - Cage2;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PEG (Day 1) - Cage2;Mouse1
3,997,185	-		BT3133	0.61	+1.3
3,997,276	+		BT3133	0.66	-0.9
3,997,310	+		BT3133	0.68	-1.0
3,997,315	+		BT3133	0.68	-3.0
3,997,315	+		BT3133	0.68	-0.2
3,997,347	+		BT3133	0.69	-0.2
3,997,347	+		BT3133	0.69	-0.7
3,997,419	+		BT3133	0.73	-2.2
3,997,426	+		BT3133	0.73	+0.3
3,997,443	-		BT3133	0.74	+2.2
3,997,481	+		BT3133	0.76	+0.6
3,997,482	-		BT3133	0.76	-0.1
3,997,527	+		BT3133	0.79	-1.4
3,997,627	+		BT3133	0.84	+0.3
3,997,627	+		BT3133	0.84	-1.0
3,997,628	-		BT3133	0.84	+2.2
3,997,629	+		BT3133	0.84	-0.6
3,997,630	-		BT3133	0.84	+2.4
3,997,689	+		BT3133	0.87	+0.3
3,997,702	-		BT3133	0.87	+0.8
3,997,703	+		BT3133	0.87	-0.5
3,997,703	+		BT3133	0.87	-1.6
3,997,703	+		BT3133	0.87	+0.9
3,997,705	+		BT3133	0.88	-2.9
3,997,705	+		BT3133	0.88	-2.6
3,997,705	+		BT3133	0.88	-0.7
3,997,706	-		BT3133	0.88	+1.4
3,997,707	+		BT3133	0.88	-1.4
3,997,808	+				-0.7
3,997,809	-				+1.3
3,997,849	+				+0.3
3,997,871	+				-1.7
3,997,871	+				+0.3
3,997,872	-				+1.0
3,997,872	-				+2.4
3,997,885	+				-1.9
3,997,885	+				+0.5
3,997,886	-				+0.8
3,998,003	+				-2.0
3,998,003	+				+0.3
3,998,004	-				+1.6
3,998,004	-				+3.1
3,998,059	+				-2.2
3,998,062	-				+3.3
3,998,102	+				-0.8
3,998,102	+				-0.8
3,998,142	+				+0.3
3,998,143	-				+0.6
3,998,174	-				-0.1
3,998,174	-				-1.0
3,998,209	+				-0.5
3,998,223	+				+0.2
3,998,306	+				-2.0
3,998,307	-				+2.7
3,998,307	-				-0.2
3,998,340	+				+1.1
3,998,358	+				+1.3
3,998,359	-				-1.0
3,998,477	-				-1.7
3,998,477	-				-1.0
3,998,477	-				+1.1
3,998,520	+				+0.0
3,998,580	+		BT3134	0.11	-0.2
3,998,580	+		BT3134	0.11	+0.3
3,998,580	+		BT3134	0.11	+0.7
3,998,581	-		BT3134	0.11	-0.3
3,998,712	-		BT3134	0.14	-0.1
3,998,712	-		BT3134	0.14	-1.2
3,998,763	+		BT3134	0.15	+1.1
3,998,763	+		BT3134	0.15	-0.2
3,998,764	-		BT3134	0.15	-0.3
3,998,767	-		BT3134	0.15	+0.5
3,998,827	+		BT3134	0.17	+0.2
3,998,947	-		BT3134	0.20	+0.3
3,998,975	-		BT3134	0.21	+1.7
3,998,988	+		BT3134	0.21	+1.3
3,998,988	+		BT3134	0.21	-1.6
3,998,989	-		BT3134	0.21	+0.2
3,998,990	+		BT3134	0.21	-1.7
3,998,996	+		BT3134	0.21	-1.9
3,998,996	+		BT3134	0.21	+0.4
3,998,997	-		BT3134	0.22	-0.2
3,998,997	-		BT3134	0.22	-0.4
3,998,997	-		BT3134	0.22	-1.1
3,999,018	+		BT3134	0.22	-1.0
3,999,094	+		BT3134	0.24	-1.5
3,999,111	+		BT3134	0.25	-2.7
3,999,111	+		BT3134	0.25	-2.0
3,999,112	-		BT3134	0.25	-0.5
3,999,137	+		BT3134	0.25	-0.8
3,999,137	+		BT3134	0.25	-1.0
3,999,244	+		BT3134	0.28	-1.7
3,999,246	+		BT3134	0.28	-2.2
3,999,246	+		BT3134	0.28	-1.5
3,999,249	-		BT3134	0.28	+0.1
3,999,249	-		BT3134	0.28	+1.2
3,999,335	-		BT3134	0.30	+0.3
3,999,346	-		BT3134	0.31	+3.7
3,999,351	-		BT3134	0.31	+0.0
3,999,351	-		BT3134	0.31	+1.3
3,999,351	-		BT3134	0.31	-0.2
3,999,402	+		BT3134	0.32	+0.1
3,999,402	+		BT3134	0.32	+0.6
3,999,403	-		BT3134	0.32	-1.2
3,999,406	+		BT3134	0.32	-1.9
3,999,625	-		BT3134	0.38	+0.8
3,999,649	+		BT3134	0.39	-1.0
3,999,650	-		BT3134	0.39	-0.4
3,999,826	+		BT3134	0.43	-1.3
3,999,827	-		BT3134	0.43	-2.2
3,999,855	+		BT3134	0.44	-0.7
3,999,859	+		BT3134	0.44	+0.3
3,999,860	-		BT3134	0.44	-0.0
3,999,864	+		BT3134	0.44	-0.2
3,999,864	+		BT3134	0.44	-1.0
3,999,864	+		BT3134	0.44	+1.1
3,999,868	+		BT3134	0.44	-3.1
3,999,868	+		BT3134	0.44	-0.5
3,999,869	-		BT3134	0.44	-0.6
3,999,875	+		BT3134	0.45	-0.2
3,999,875	+		BT3134	0.45	-1.4
3,999,886	-		BT3134	0.45	+0.5
3,999,886	-		BT3134	0.45	-0.5
4,000,061	+		BT3134	0.49	-0.7
4,000,065	-		BT3134	0.50	-1.2
4,000,091	+		BT3134	0.50	+1.3
4,000,092	-		BT3134	0.50	-0.6
4,000,118	-		BT3134	0.51	-2.0
4,000,154	+		BT3134	0.52	-1.0
4,000,159	+		BT3134	0.52	-1.2
4,000,159	+		BT3134	0.52	-1.1
4,000,165	-		BT3134	0.52	-0.5
4,000,165	-		BT3134	0.52	+0.5
4,000,165	-		BT3134	0.52	-1.8
4,000,212	+		BT3134	0.53	-0.0
4,000,214	+		BT3134	0.53	-2.7
4,000,214	+		BT3134	0.53	+0.3
4,000,214	+		BT3134	0.53	-1.2
4,000,217	-		BT3134	0.53	-0.5
4,000,310	+		BT3134	0.56	-0.7
4,000,311	-		BT3134	0.56	-0.5
4,000,346	+		BT3134	0.57	-0.5
4,000,393	+		BT3134	0.58	+0.0
4,000,394	-		BT3134	0.58	+0.9
4,000,394	-		BT3134	0.58	-0.7
4,000,394	-		BT3134	0.58	-0.5
4,000,432	-		BT3134	0.59	+0.1
4,000,471	+		BT3134	0.60	-0.1
4,000,471	+		BT3134	0.60	-0.7
4,000,479	-		BT3134	0.60	+0.3
4,000,483	+		BT3134	0.60	-0.8
4,000,483	+		BT3134	0.60	-1.5
4,000,484	-		BT3134	0.60	-1.0
4,000,543	-		BT3134	0.62	-1.7
4,000,543	-		BT3134	0.62	-0.7
4,000,553	-		BT3134	0.62	-2.0
4,000,553	-		BT3134	0.62	+1.7
4,000,555	-		BT3134	0.62	+0.1
4,000,555	-		BT3134	0.62	+0.0
4,000,555	-		BT3134	0.62	-1.7
4,000,570	-		BT3134	0.63	-1.5
4,000,579	+		BT3134	0.63	-0.1
4,000,579	+		BT3134	0.63	-2.3
4,000,580	-		BT3134	0.63	-0.7
4,000,581	+		BT3134	0.63	-2.5
4,000,581	+		BT3134	0.63	-1.0
4,000,582	-		BT3134	0.63	-0.5
4,000,628	-		BT3134	0.64	-0.7
4,000,652	+		BT3134	0.65	-1.3
4,000,658	+		BT3134	0.65	-2.0
4,000,658	+		BT3134	0.65	-1.8
4,000,658	+		BT3134	0.65	-0.7
4,000,659	-		BT3134	0.65	-1.7
4,000,674	+		BT3134	0.65	+0.6
4,000,675	-		BT3134	0.65	+0.2
4,000,710	+		BT3134	0.66	-0.7
4,000,713	+		BT3134	0.66	-1.5
4,000,713	+		BT3134	0.66	+2.3
4,000,713	+		BT3134	0.66	-0.7
4,000,714	-		BT3134	0.67	-0.7
4,000,729	-		BT3134	0.67	-0.5
4,000,767	-		BT3134	0.68	-1.8
4,000,814	-		BT3134	0.69	+1.0
4,000,817	+		BT3134	0.69	+0.8
4,000,818	-		BT3134	0.69	-1.1
4,000,818	-		BT3134	0.69	-1.1
4,000,818	-		BT3134	0.69	-0.8
4,000,818	-		BT3134	0.69	-1.1
4,000,819	+		BT3134	0.69	-1.7
4,000,820	-		BT3134	0.69	-0.7
4,000,845	+		BT3134	0.70	-1.3
4,000,846	-		BT3134	0.70	+0.8
4,000,857	+		BT3134	0.70	-1.1
4,000,875	-		BT3134	0.71	+1.6
4,000,920	+		BT3134	0.72	-0.7
4,000,936	+		BT3134	0.72	-0.2
4,000,937	-		BT3134	0.72	-1.2
4,000,937	-		BT3134	0.72	-1.5
4,000,937	-		BT3134	0.72	+0.1
4,000,938	+		BT3134	0.72	+0.0
4,000,941	+		BT3134	0.72	-0.7
4,000,942	-		BT3134	0.72	+1.3
4,000,976	+		BT3134	0.73	+0.9
4,000,977	-		BT3134	0.73	+0.3
4,000,977	-		BT3134	0.73	-0.4
4,000,977	-		BT3134	0.73	-1.1
4,000,977	-		BT3134	0.73	-0.8
4,000,977	-		BT3134	0.73	-2.0
4,000,978	+		BT3134	0.73	+0.3
4,000,979	-		BT3134	0.73	-1.5
4,000,979	-		BT3134	0.73	-0.2
4,000,981	-		BT3134	0.74	+0.3
4,000,991	+		BT3134	0.74	-1.8
4,001,036	+		BT3134	0.75	-0.2
4,001,036	+		BT3134	0.75	+1.3
4,001,039	-		BT3134	0.75	-0.2
4,001,072	-		BT3134	0.76	-1.7
4,001,077	-		BT3134	0.76	-0.1
4,001,086	-		BT3134	0.76	-1.0
4,001,094	+		BT3134	0.76	+0.0
4,001,095	-		BT3134	0.76	-0.7
4,001,107	-		BT3134	0.77	+0.3
4,001,149	-		BT3134	0.78	-1.5
4,001,152	+		BT3134	0.78	-1.9
4,001,159	+		BT3134	0.78	-1.2
4,001,176	+		BT3134	0.79	-0.7
4,001,180	+		BT3134	0.79	-1.4
4,001,180	+		BT3134	0.79	-1.2
4,001,181	-		BT3134	0.79	-1.0
4,001,199	+		BT3134	0.79	-1.4
4,001,205	+		BT3134	0.79	+0.1
4,001,272	-		BT3134	0.81	-0.5
4,001,276	+		BT3134	0.81	-1.5
4,001,280	+		BT3134	0.81	-0.7
4,001,280	+		BT3134	0.81	-2.5
4,001,280	+		BT3134	0.81	-2.8
4,001,332	-		BT3134	0.83	-1.5
4,001,353	-		BT3134	0.83	-1.7
4,001,407	+		BT3134	0.85	-0.2
4,001,408	-		BT3134	0.85	-0.7
4,001,472	+		BT3134	0.86	-1.8
4,001,476	-		BT3134	0.86	-1.2
4,001,501	-		BT3134	0.87	-0.3
4,001,616	-				-1.7
4,001,623	+				-1.2
4,001,629	+				-1.3
4,001,644	+				-1.2
4,001,644	+				-2.4
4,001,644	+				-0.8
4,001,644	+				-1.4
4,001,645	-				-1.8
4,001,645	-				-1.8
4,001,650	+				-2.0
4,001,651	-				-0.7
4,001,732	-				-1.4
4,001,732	-				+4.2
4,001,785	-				+0.3
4,001,787	+				-1.6
4,001,890	+				+0.8
4,001,890	+				-0.7
4,001,891	-				-1.7
4,001,891	-				-1.0
4,001,892	+				-1.7
4,001,900	+				+0.2
4,001,900	+				-0.2
4,001,901	-				-2.5
4,002,049	+				-2.2
4,002,050	-				-0.7
4,002,050	-				-2.6
4,002,160	-				-1.6
4,002,179	-				+0.1
4,002,288	-				-1.1
4,002,536	+		BT3135	0.28	-0.7
4,002,537	-		BT3135	0.28	-1.0
4,002,594	+		BT3135	0.33	+2.3
4,002,747	+		BT3135	0.45	-1.7
4,002,747	+		BT3135	0.45	-2.0
4,002,747	+		BT3135	0.45	-1.5
4,002,747	+		BT3135	0.45	-1.0
4,002,747	+		BT3135	0.45	-0.7
4,002,748	-		BT3135	0.46	-4.3
4,002,748	-		BT3135	0.46	+0.5
4,002,748	-		BT3135	0.46	+2.2
4,002,922	+		BT3135	0.60	-0.2
4,002,957	+		BT3135	0.63	-1.8
4,002,958	-		BT3135	0.63	-1.2
4,002,977	-		BT3135	0.64	+0.1