Experiment: Post-colonization (Day 14) - Cage7;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0685 and BT0686 are separated by 168 nucleotides BT0686 and BT_0687 are separated by 147 nucleotides
BT0685: BT0685 - putative Na+/H+ exchanger (NCBI ptt file), at 851,405 to 852,877
BT0685
BT0686: BT0686 - putative uracil permease (uracil transporter) (NCBI ptt file), at 853,046 to 854,230
BT0686
BT_0687: BT_0687 - hydroxylamine reductase (RefSeq), at 854,378 to 856,003
_0687
Position (kb) 853
854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 852.055 kb on - strand, within BT0685 at 852.098 kb on - strand, within BT0685 at 852.185 kb on - strand at 852.185 kb on - strand, within BT0685 at 852.360 kb on + strand, within BT0685 at 852.517 kb on - strand, within BT0685 at 852.558 kb on - strand, within BT0685 at 852.582 kb on - strand, within BT0685 at 852.617 kb on + strand, within BT0685 at 852.617 kb on + strand, within BT0685 at 852.652 kb on + strand, within BT0685 at 852.653 kb on - strand, within BT0685 at 852.689 kb on - strand, within BT0685 at 852.774 kb on - strand at 852.848 kb on + strand at 852.885 kb on - strand at 852.890 kb on - strand at 853.041 kb on + strand at 853.140 kb on + strand at 853.187 kb on - strand, within BT0686 at 853.187 kb on - strand, within BT0686 at 853.267 kb on - strand, within BT0686 at 853.402 kb on + strand, within BT0686 at 853.418 kb on - strand, within BT0686 at 853.457 kb on - strand, within BT0686 at 853.549 kb on + strand, within BT0686 at 853.735 kb on - strand, within BT0686 at 853.737 kb on - strand, within BT0686 at 853.737 kb on - strand, within BT0686 at 853.753 kb on + strand, within BT0686 at 853.859 kb on + strand, within BT0686 at 853.936 kb on + strand at 853.937 kb on - strand, within BT0686 at 853.941 kb on + strand, within BT0686 at 854.047 kb on - strand, within BT0686 at 854.051 kb on - strand, within BT0686 at 854.051 kb on - strand, within BT0686 at 854.068 kb on + strand, within BT0686 at 854.068 kb on + strand, within BT0686 at 854.196 kb on + strand at 854.211 kb on + strand at 854.316 kb on + strand at 854.317 kb on - strand at 854.345 kb on - strand at 854.356 kb on - strand at 854.362 kb on + strand at 854.366 kb on + strand at 854.367 kb on - strand at 854.447 kb on + strand at 854.486 kb on + strand at 854.500 kb on + strand at 854.501 kb on - strand at 854.556 kb on + strand, within BT_0687 at 854.557 kb on - strand, within BT_0687 at 854.573 kb on + strand, within BT_0687 at 854.574 kb on - strand, within BT_0687 at 854.657 kb on - strand, within BT_0687 at 854.725 kb on - strand, within BT_0687 at 854.787 kb on + strand, within BT_0687 at 854.807 kb on - strand, within BT_0687 at 854.868 kb on - strand, within BT_0687 at 854.891 kb on + strand, within BT_0687 at 854.892 kb on - strand, within BT_0687 at 855.059 kb on - strand, within BT_0687 at 855.070 kb on - strand, within BT_0687
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage7;Mouse3 remove 852,055 - BT0685 0.44 -1.6 852,098 - BT0685 0.47 -1.8 852,185 - +0.6 852,185 - BT0685 0.53 -1.2 852,360 + BT0685 0.65 -0.6 852,517 - BT0685 0.75 +1.6 852,558 - BT0685 0.78 -0.8 852,582 - BT0685 0.80 -0.0 852,617 + BT0685 0.82 +0.7 852,617 + BT0685 0.82 -1.2 852,652 + BT0685 0.85 -0.4 852,653 - BT0685 0.85 -0.8 852,689 - BT0685 0.87 +1.0 852,774 - -1.0 852,848 + -3.3 852,885 - -0.4 852,890 - -1.4 853,041 + -1.0 853,140 + +1.2 853,187 - BT0686 0.12 -0.8 853,187 - BT0686 0.12 +1.2 853,267 - BT0686 0.19 -1.2 853,402 + BT0686 0.30 -0.0 853,418 - BT0686 0.31 +0.3 853,457 - BT0686 0.35 +1.6 853,549 + BT0686 0.42 -0.3 853,735 - BT0686 0.58 -0.4 853,737 - BT0686 0.58 +0.2 853,737 - BT0686 0.58 -0.0 853,753 + BT0686 0.60 -0.8 853,859 + BT0686 0.69 +0.6 853,936 + -1.0 853,937 - BT0686 0.75 -0.8 853,941 + BT0686 0.76 +0.3 854,047 - BT0686 0.84 +0.2 854,051 - BT0686 0.85 +2.2 854,051 - BT0686 0.85 -1.0 854,068 + BT0686 0.86 -1.0 854,068 + BT0686 0.86 +1.6 854,196 + -1.0 854,211 + -0.9 854,316 + -1.2 854,317 - -1.0 854,345 - -0.4 854,356 - -0.9 854,362 + -2.1 854,366 + -3.3 854,367 - -1.1 854,447 + +0.3 854,486 + +1.0 854,500 + -0.3 854,501 - +0.3 854,556 + BT_0687 0.11 +0.2 854,557 - BT_0687 0.11 -2.7 854,573 + BT_0687 0.12 -0.7 854,574 - BT_0687 0.12 -0.4 854,657 - BT_0687 0.17 +0.4 854,725 - BT_0687 0.21 +0.8 854,787 + BT_0687 0.25 -1.2 854,807 - BT_0687 0.26 -1.0 854,868 - BT_0687 0.30 -2.2 854,891 + BT_0687 0.32 -1.9 854,892 - BT_0687 0.32 -1.6 855,059 - BT_0687 0.42 +0.4 855,070 - BT_0687 0.43 -0.6
Or see this region's nucleotide sequence